All Classes
AboutDialog
AbstractCellEditor
AbstractTreeTableModel
AlignedTabbedPaneUI
AlignmentConstants
AlignmentIndexTable
AnchorConstraints
AnchorManager
AnimationEvent
AnimationListener
ArrayConstants
ASCIIFileIndexInfo
AutoHideBorderLayout
AutoHideButton
AutoHideButtonPanel
AutoHideButtonPanelUI
AutoHideButtonUI
AutoHideExpandPanel
AutoHideExpandPanelUI
AutoHidePolicy
AutoHidePolicy.ExpandMode
AxisUtils
BackgroundPainter
Base64Utils
BaseDataModel
BaseDataModel.eDataType
BaseDataRecord
BaseH5FileBase
BorderSplitter
ByteArrayList
ChangeNotifier
ChromosomeBand
CloudTimer
CloudUtils
CMPH5Constants
CMPH5File
CMPH5FileBase
CMPH5FileData
CMPH5ReadGroupInfo
CMPH5ReferenceInfo
ColorConstants
ColorEditor
ColorPalette
ColorRenderer
CommandLineOptions
ComponentAnimator
CompoundDockable
CompoundDockingPanel
ConsensusCallsTable
ContextHelpUtils
ContigInfo
DataFileInfo
DataFileInfo.eFileType
DataStorage
DataStorageBase
DefaultDockableContainerFactory
DeNovoContigInfo
DeNovoSummaryParser
DeNovoSummaryStorage
DeNovoTablePanel
DesktopApp
DetachedDockView
DetachedDockViewUI
DetailsDataRequest
DetailsDataRequestsQueue
DetailsOptions
DetailsStorage
DNAColorsOptionsPane
Dockable
DockableActionCustomizer
DockableContainer
DockableContainerFactory
DockableContainerFactory.ParentType
DockableDragSource
DockablePaneBase
DockablePanel
DockableResolver
DockableScrollPaneBase
DockableSelectionEvent
DockableSelectionListener
DockableState
DockableState.Location
DockableStateChangeEvent
DockableStateChangeListener
DockableStateWillChangeEvent
DockableStateWillChangeListener
DockableStoreButton
DockDragEvent
DockDropEvent
DockDropReceiver
DockEvent
DockGroup
DockingActionAddDockableEvent
DockingActionCloseEvent
DockingActionCreateTabEvent
DockingActionDockableEvent
DockingActionEvent
DockingActionListener
DockingActionSimpleStateChangeEvent
DockingActionSplitComponentEvent
DockingActionSplitDockableContainerEvent
DockingActionSplitDockableEvent
DockingBorderLayout
DockingConstants
DockingConstants.Hide
DockingConstants.Split
DockingContext
DockingDesktop
DockingPanel
DockingPreferences
DockingSelectorDialog
DockingSplitPaneUI
DockingUISettings
DockingUtilities
DockKey
DockTabbedPane
DockView
DockViewAsTab
DockViewTitleBar
DockViewTitleBarUI
DockViewUI
DragControler
DragControlerFactory
DragControlerGlassPane
EpiProColorOptionsPane
EpiProPalette
EpiProPaletteRenderer
EpiProReadInfo
EpiProReadsReader
ExportDataUtils
ExportRegionAsGFF
FASTAFileIndexInfo
FastaFileReader
FastaIndexer
FeatureRenderer
FileFilterGeneric
FileFormatException
FileIndexInfo
FilenameFilterDirectory
FilenameFilterGeneric
FilenameFilterMultipleExtensions
FileUtils
FloatingDialog
FloatingDockableContainer
FontConstants
FormattedDoubleInputVerifier
FormattedFieldInputVerifier
GeneDB
GeneInfo
GenomicDataAssembler
GenomicDataBuilder
GenomicDataServer
GenomicDataStructures
GenomicTableBase
GenomicTableDeNovo
GenomicTableInterval
GenomicTablePanel
GenomicTableTrack
GenomicUtils
GenomicViewBase
GenomicViewChangeEvent
GenomicViewChangeEvent.GenomicViewEventType
GenomicViewCircular
GenomicViewData
GenomicViewDetails
GenomicViewDetailsData
GenomicViewDetailsDraw
GenomicViewDraw
GenomicViewEvents
GenomicViewHorizontal
GenomicViewInspect
GenomicViewRegion
GenomicViewSingleContig
GenomicViewVertical
GFF3Reader
GFFDataModel
GFFIndexer
GFFIndexInfo
GFFMetadataInfo
GFFMetadataInfoCalculator
GFFModificationsReader
GFFSummaryConstants
GFFSummaryReader
GFFVariantsReader
GoToDialog
GraphConstants
GraphPrimitive
GraphStructure
GraphUtil
GUIUtils
HDF5ChunkInfo
HDF5ExceptionEx
HDF5File
HDF5HyperslabInfo
HDFService
HDFServiceCallbackHandler
HDFServiceCallbackImpl
HDFServiceExperienceIndex
HDFServiceLocalTest
HDFServiceStub
HDFServiceStub.ExtensionMapper
HDFServiceStub.GetAnnotatedInsertions
HDFServiceStub.GetAnnotatedInsertions.Factory
HDFServiceStub.GetAnnotatedInsertionsResponse
HDFServiceStub.GetAnnotatedInsertionsResponse.Factory
HDFServiceStub.GetAnnotatedResults
HDFServiceStub.GetAnnotatedResults.Factory
HDFServiceStub.GetAnnotatedResultsResponse
HDFServiceStub.GetAnnotatedResultsResponse.Factory
HDFServiceStub.GetConsensusSequence
HDFServiceStub.GetConsensusSequence.Factory
HDFServiceStub.GetConsensusSequenceResponse
HDFServiceStub.GetConsensusSequenceResponse.Factory
HDFServiceStub.GetContigNames
HDFServiceStub.GetContigNames.Factory
HDFServiceStub.GetContigNamesResponse
HDFServiceStub.GetContigNamesResponse.Factory
HDFServiceStub.GetFileHeader
HDFServiceStub.GetFileHeader.Factory
HDFServiceStub.GetFileHeaderResponse
HDFServiceStub.GetFileHeaderResponse.Factory
HDFServiceStub.GetIPDConsensus
HDFServiceStub.GetIPDConsensus.Factory
HDFServiceStub.GetIPDConsensusResponse
HDFServiceStub.GetIPDConsensusResponse.Factory
HDFServiceStub.GetServiceExperienceIndexResponse
HDFServiceStub.GetServiceExperienceIndexResponse.Factory
HDFServiceStub.GetServiceInfoResponse
HDFServiceStub.GetServiceInfoResponse.Factory
HDFServiceWrapper
HDFTest
IChangeNotifier
IdeogramDB
IdeogramViewPrintingHelper
ImportDataHelper
InfoBuilder
InsertNodeException
InspectDataDialog
IntegerRenderer
Interval
IntervalRenderer
IntervalScale
IntervalTree
IntervalTreeException
IntervalTreeNode
IntervalTreeQuery
IntervalTreeVisitor
IPDConsensusStorage
IPDConsensusTable
IProgressNotifier
IVariableResolutionDataModelServer
JCheckBoxMenuItemEx
JComboBoxCtrl
JHyperlinksHtmlTooltip
JLabelCtrl
JMultiLineHtmlToolTip
JMultiLineToolTip
JNLPFileBuilder
JNLPFileWrapper
JNLPService
JobInfo
JobMetadataInfo
JRadioButtonMenuItemEx
JTabbedPaneSmartIcon
JTabbedPaneSmartIconManager
JToolbarToggleButton
JTreeTable
KineticsComparator
LibraryConstants
LinkedSortedMultiSet
LocalFileNode
LocalFileSystemModel
LocalTestApp
Locus
LoggerUtils
LongRenderer
Marker
MarkerCollection
MarkerComparator
MathConstants
MathUtility
MaximizedDockView
MaximizedDockViewAsTab
MergeSort
MessageUtils
MetadataInfoParser
MotifData
MotifsDB
MotifsReader
MultiIterator
OpenRemoteDataHelper
PaletteCtrl
PanelConstants
PerformanceUtils
PreferencesDialogBase
PreferencesDialogEx
PrintOptionsDialog
ProgramConstants
ProgramGlobals
ProgramUtils
ProgressDialog
PropertiesDialog
PropertiesHelper
QVThresholdOptionsPane
RawRead
ReadInfo
ReferenceInfo
ReferenceInfoParser
ReferenceSequenceStorage
RegionsOfInterestDialog
RegionsOfInterestStorage
RelativeDockablePosition
RemoteFile
RemoteFileNode
RemoteFileSystemModel
RemoveTrackDialog
ResourceUtils
RolloverIcon
RoundedBorder
RStartComparator
RuntimeConfigUtils
SampleInfo
ScreenCaptureUtils
SelectFileDialog
SelectionInfoPanel
ServiceUtils
SessionDataHelper
SessionDataTimer
SessionDataTimerTask
ShadowBorder
SingleDockableContainer
SmartIconJButton
SMRTHTMLLayout
SMRTViewDialog
SMRTViewUpdater
SortedMultiIterator
SortedRefIndexTable
SplitContainer
StrandComparator
StreamingDataConsumer
StringUtils
SweepLineIterator
TabbedContainerActions
TabbedDockableContainer
TabbedDockView
TabFactory
TableModelAnnotations
TableModelBase
TableModelDeNovo
TableModelGenomicInterval
TableModelTrack
TablePanelBase
TemplateInfo
TextFileIndexer
ToolBarButtonBorder
ToolBarConstraints
ToolBarContainer
ToolBarGripper
ToolBarGripperUI
ToolBarIO
ToolBarIOReadInfo
ToolBarPanel
ToolBarPanelBorder
ToolBarPanelLayout
ToolBarPersistence
TrackDataInfo
TrackDataInfo.eTrackSource
TrackDataInfo.eTrackStatus
TrackDrawInfo
TrackInfoParser
TracksDataInfoList
TreeSortedMultiSet
TreeTableModel
UCharMatrixArray
UCharStreamingDataConsumer
UCSCGTFReader
UIntMatrixArray
UIntStreamingDataConsumer
UndoIterator
UpdateDetailsDataHelper
UpdateInsertionsDataHelper
UpdateModificationsDataHelper
UpdaterUtils
UpdateVariantsDataHelper
VariableResolutionDataModel
VariableResolutionDataModelsMerger
VariableResolutionDataSet
VariableResolutionDataSetValues
VariableResolutionMemoryDataModel
VariableValuesDataRecord
VariableValuesTypeDefs
VCFMultiSampleReader
VCFMultiSampleReader.vcf_version
VCFReader
VersionService
ViewLayoutInfo
VioletApp
VioletAppBase
VioletAppBase.APP_TYPE
VioletFileAnalyzer
VioletFrame
VioletFrameActions
VioletFrameBase
VioletFrameChanges
VioletFrameCreate
VioletFrameDesktop
VioletFrameIO
VioletFrameSummary
VioletStatusBar
VioletToolBar
VioletToolBarTest
VisService
VisServiceCallbackHandler
VisServiceCallbackImpl
VisServiceLocalTest
VisServiceStub
VisServiceStub.ExtensionMapper
VisServiceStub.GetDefaultDirectoryResponse
VisServiceStub.GetDefaultDirectoryResponse.Factory
VisServiceStub.GetDirectoryList
VisServiceStub.GetDirectoryList.Factory
VisServiceStub.GetDirectoryListResponse
VisServiceStub.GetDirectoryListResponse.Factory
VisServiceStub.GetFastaSequence
VisServiceStub.GetFastaSequence.Factory
VisServiceStub.GetFastaSequenceResponse
VisServiceStub.GetFastaSequenceResponse.Factory
VisServiceStub.GetFile
VisServiceStub.GetFile.Factory
VisServiceStub.GetFileResponse
VisServiceStub.GetFileResponse.Factory
VisServiceStub.GetFilesInformation
VisServiceStub.GetFilesInformation.Factory
VisServiceStub.GetFilesInformationResponse
VisServiceStub.GetFilesInformationResponse.Factory
VisServiceStub.GetGZippedFile
VisServiceStub.GetGZippedFile.Factory
VisServiceStub.GetGZippedFileResponse
VisServiceStub.GetGZippedFileResponse.Factory
VisServiceStub.GetMetadataInfo
VisServiceStub.GetMetadataInfo.Factory
VisServiceStub.GetMetadataInfoResponse
VisServiceStub.GetMetadataInfoResponse.Factory
VisServiceStub.GetReferenceInfo
VisServiceStub.GetReferenceInfo.Factory
VisServiceStub.GetReferenceInfoResponse
VisServiceStub.GetReferenceInfoResponse.Factory
VisServiceStub.GetServiceInfoResponse
VisServiceStub.GetServiceInfoResponse.Factory
VisServiceStub.GetTracksListInfo
VisServiceStub.GetTracksListInfo.Factory
VisServiceStub.GetTracksListInfoResponse
VisServiceStub.GetTracksListInfoResponse.Factory
VisServiceStub.PutFile
VisServiceStub.PutFile.Factory
VisServiceStub.PutFileResponse
VisServiceStub.PutFileResponse.Factory
VisServiceStub.WsContigInfo
VisServiceStub.WsContigInfo.Factory
VisServiceStub.WsFileInfo
VisServiceStub.WsFileInfo.Factory
VisServiceStub.WsJobMetadataInfo
VisServiceStub.WsJobMetadataInfo.Factory
VisServiceStub.WsReferenceInfo
VisServiceStub.WsReferenceInfo.Factory
VisServiceStub.WsTrackInfo
VisServiceStub.WsTrackInfo.Factory
VisServiceWrapper
VisThreadPool
VisWorkDoneQueue
VisWorkerThread
VisWorkSenderThread
VisWorkToDoQueue
VLButtonUI
VLToolBar
VLToolBarLayout
WebBrowserPanel
WebBrowserUtils
WebStartApp
WholeGenomePanel
Workspace
WorkspaceButton
WorkspaceException
WorkspaceManager
WorkspaceMenuItem
WsContigInfo
WSDesktop
WSDockKey
WsFastaSequenceInfo
WsFileInfo
WsIntervalSvc
WsIPDConsensusInfo
WsJobMetadataInfo
WsRead
WsReadEx
WsReferenceInfo
WsResults
WsResultsInfo
WsTrackInfo
XMLInfoBaseParser
XMLInfoConstants
XMLObjectSerializerUtils