com.pacbio.secondary.vis.common.utils.constants

Class EpiProPalette.EpiProContigPalette

java.lang.Object

com.pacbio.secondary.vis.common.utils.constants.EpiProPalette.EpiProContigPalette

All Implemented Interfaces:

java.io.Serializable

Enclosing class:

EpiProPalette

public class EpiProPalette.EpiProContigPalette
extends java.lang.Object
implements java.io.Serializable

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected EpiProPalette.ColorInfo	color_info
protected int	contig_end
protected int	contig_length
protected int	contig_start
protected java.awt.Color[]	palette

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	EpiProPalette.EpiProContigPalette()
	EpiProPalette.EpiProContigPalette(EpiProPalette.ColorInfo info, int contig_length, int mode)

Method Summary

Methods

Modifier and Type	Method and Description
protected float	getColorEnd()
protected float	getColorStart()
int	getContigEnd()
int	getContigLength()
int	getContigStart()
protected java.awt.Color[]	getPalette()
java.awt.Color	getUnmappedReadColor(long genomic_location)
void	setColorEnd(float color_end)
void	setColorStart(float color_start)
void	setContigEnd(int contig_end)
void	setContigStart(int contig_start)
protected void	updateContigPalette(int mode)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

palette

protected transient java.awt.Color[] palette

contig_start

protected int contig_start

contig_end

protected int contig_end

contig_length

protected int contig_length

color_info

protected EpiProPalette.ColorInfo color_info

Constructor Detail

EpiProPalette.EpiProContigPalette

protected EpiProPalette.EpiProContigPalette()

EpiProPalette.EpiProContigPalette

public EpiProPalette.EpiProContigPalette(EpiProPalette.ColorInfo info,
                                 int contig_length,
                                 int mode)

Method Detail

updateContigPalette

protected void updateContigPalette(int mode)

getPalette

protected java.awt.Color[] getPalette()

getUnmappedReadColor

public java.awt.Color getUnmappedReadColor(long genomic_location)

getContigLength

public int getContigLength()

getContigStart

public int getContigStart()

setContigStart

public void setContigStart(int contig_start)

getContigEnd

public int getContigEnd()

setContigEnd

public void setContigEnd(int contig_end)

getColorStart

protected float getColorStart()

setColorStart

public void setColorStart(float color_start)

getColorEnd

protected float getColorEnd()

setColorEnd

public void setColorEnd(float color_end)