com.pacbio.secondary.vis.common.utils.constants

Class ProgramConstants

java.lang.Object

com.pacbio.secondary.vis.common.utils.constants.ProgramConstants

public class ProgramConstants
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
static byte	ABS_MAX_DETAILS_MAX_COVERAGE
static int	ABS_MAX_DETAILS_VIEW_DYNAMIC_SIZE
static int	ABS_MAX_DETAILS_VIEW_FIXED_SIZE
static int	ABS_MIN_SCREEN_WIDTH
static int	ABS_MIN_SCREN__HEIGHT
static boolean	ALWAYS_ADD_MAIN_SAMPLE
static java.lang.String	CACHE_DIRECTORY
static java.lang.String	CLIENT_PROGRAM_NAME
static java.lang.String	CONFIGURATION_FILE
static java.lang.String	CONFIGURATION_FOLDER
static int	DEFAULT_BASE_MODS_FILTER_THRESHOLD
static int	DEFAULT_DETAILS_COARSE_MODE
static byte	DEFAULT_DETAILS_MAX_COVERAGE
static int	DEFAULT_DETAILS_VIEW_DYNAMIC_SIZE
static int	DEFAULT_DETAILS_VIEW_FIXED_SIZE
static int	DEFAULT_DETAILS_VIEW_LIMITING_MODE
static java.lang.String	DEFAULT_HOME_URL
static java.lang.String	DEFAULT_LAYOUT_FILE_NAME
static java.lang.String	DEFAULT_PROJECT_EXTENSION
static java.lang.String	DEFAULT_ROIS_EXTENSION
static java.lang.String	DEFAULT_USER_DATA_DIRECTORY
static int	DEFAULT_VIEW_HEIGHT
static int	DEFAULT_VIEW_WIDTH
static java.lang.String	DEFAULT_WEB_SEARCH
static java.lang.String	DENOVO_REF_NAME
static boolean	ENABLE_EPIPRO
static boolean	ENABLE_VARIANTS_VCF
static java.lang.String	EPIPRO_PROGRAM_NAME
static java.lang.String	EPIPRO_READS_MARKER_V1
static java.lang.String	EPIPRO_READS_MARKER_V2
static java.lang.String	FASTA_CONTIG_INDEX_EXTENSION
static java.lang.String	FASTA_INDEX_EXTENSION
static java.lang.String	GENERIC_HTTP_DEFAULT_PORT
static java.lang.String	GZIPPED_FILE_MARKER
static java.lang.String	HDF_ALIGNED_READS
static java.lang.String	HDF_ALIGNED_READS_MARKER
static java.lang.String	HDF_ALIGNED_READS_MARTIN
static java.lang.String	HDF_ALIGNMENT_SUMMARY_GFF3
static java.lang.String	HDF_ALIGNMENT_SUMMARY_GZIP_GFF3
static java.lang.String	HDF_ASSEMBLED_READS
static java.lang.String	HDF_ASSEMBLED_SUMMARY_GFF3
static java.lang.String	HDF_ASSEMBLED_SUMMARY_GZIP_GFF3
static java.lang.String	HDF_EPIPRO_GZIP_READS_V1
static java.lang.String	HDF_EPIPRO_GZIP_READS_V2
static java.lang.String	HDF_EPIPRO_READS_MARKER_V1
static java.lang.String	HDF_EPIPRO_READS_MARKER_V2
static java.lang.String	HDF_EPIPRO_READS_V1
static java.lang.String	HDF_EPIPRO_READS_V2
static java.lang.String	HDF_GMAP_JOB_MARKER
static java.lang.String	HDF_ISOSEQ_FLNC_READS
static java.lang.String	HDF_ISOSEQ_READS
static java.lang.String	HDF_MODIFICATIONS_GFF3
static java.lang.String	HDF_MODIFICATIONS_GFF3_MARKER
static java.lang.String	HDF_MODIFICATIONS_GZIP_GFF3
static java.lang.String	HDF_MOTIFS_CSV
static java.lang.String	HDF_MOTIFS_GFF3
static java.lang.String	HDF_MOTIFS_GFF3_MARKER
static java.lang.String	HDF_MOTIFS_GZIP_GFF3
static java.lang.String	HDF_SERVICE_PROGRAM_NAME
static java.lang.String	HDF_SERVICE_URL
static java.lang.String	HDF_SUMMARY_GFF3_GZIP_MARKER
static java.lang.String	HDF_SUMMARY_GFF3_MARKER
static java.lang.String	HDF_SVC_FILE_NOT_FOUND_ERROR
static java.lang.String	HDF_SVC_GENERIC_ERROR
static java.lang.String	HDF_VARIANTS_GATK_VCF
static java.lang.String	HDF_VARIANTS_GATK_VCF_MARKER
static java.lang.String	HDF_VARIANTS_GFF3
static java.lang.String	HDF_VARIANTS_GFF3_MARKER
static java.lang.String	HDF_VARIANTS_GZIP_GATK_VCF
static java.lang.String	HDF_VARIANTS_GZIP_GFF3
static java.lang.String	HDF_VARIANTS_GZIP_VCF
static java.lang.String	HDF_VARIANTS_VCF
static java.lang.String	HDF_VARIANTS_VCF_MARKER
static java.awt.RenderingHints	HINTS_ANTIALIAS_ON
static int	HUMAN_CHR_LENGTH
static int	INSPECTION_VIEW_POST_OFFSET
static int	INSPECTION_VIEW_PRE_OFFSET
static java.lang.String	JNLP_SERVICE_PROGRAM_NAME
static java.lang.String	JNLP_SERVICE_URL
static char	LINUX_FILE_SEPARATOR
static int	LOW_BASE_MODS_THRESHOLD
static int	MAX_CACHED_KINETOGRAM_LENGTH
static int	MAX_CACHED_REFERENCE_LENGTH
static int	MAX_INSPECTION_VIEW_REGION_SIZE
static int	MAX_NUM_VIEW_HISTORY_ENTRIES
static int	MAX_REQUEST_KINETOGRAM_LENGTH
static int	MAX_REQUEST_REFERENCE_LENGTH
static int	MAX_VIEW_RANGE_EXTRA
static java.lang.String	METADATA_CACHE_EXTENSION
static int	MID_BASE_MODS_THRESHOLD
static int	MIN_DELTA_FORCE_UPDATE_AFTER_ZOOM
static int	MIN_VIEW_RANGE
static java.lang.String	NA
static java.lang.String[]	NAMED_SERVERS_WHITELIST
static java.lang.String	NCBI_REFSEQ_GENES_MARKER
static java.lang.String	PACBIO_DEVNET_URL
static java.lang.String	PACBIO_HOME_URL
static boolean	PAINT_USING_DECORATED_FRAME
static int	PREVIOUS_ZOOM
static java.lang.String	PRINTABLE_CLIENT_PROGRAM_NAME
static java.lang.String	RDF_JOB_METADATA_MARKER
static java.lang.String	REFERENCES_INDEX_XML_FILE
static java.lang.String	S_LINUX_FILE_SEPARATOR
static java.lang.String	S_WINDOWS_FILE_SEPARATOR
static java.lang.String	SEYMOUR_CONFIG_XML_FILE
static java.lang.String	SEYMOUR_HOME_ENV
static boolean	SORT_ANNOTATION_DATA
static boolean	SORT_DENOVO_CONTIGS
static int	TEST_EXTRA_GENE_TRACK
static java.lang.String	URL_SEPARATOR
static java.lang.String	USER_DEFAULT_DATA_DIRECTORY
static java.lang.String	USER_DEFAULT_GRAPHICS_DIRECTORY
static java.lang.String	USER_DEFAULT_PROJECTS_DIRECTORY
static java.lang.String	USER_DEFAULT_ROIS_DIRECTORY
static java.lang.String	USER_HOME_ENV
static java.lang.String	VERSION_DATE
static java.lang.String	VERSION_STRING
static java.lang.String	VIOLET_HTML_HREF_TAG_NAVIGATE
static java.lang.String	VIOLET_USER_DATA_DIRECTORY
static java.lang.String	VIS_SERVICE_PROGRAM_NAME
static java.lang.String	VIS_SERVICE_URL
static long	WEB_SERVICES_CLIENT_TIMEOUT
static java.lang.String	WEB_SERVICES_DEFAULT_PORT
static char	WINDOWS_FILE_SEPARATOR
static java.lang.String	XML_INFO_REFERENCE_MARKER
static java.lang.String	XML_REFERENCE_INFO_NAME

Constructor Summary

Constructors

Constructor and Description
ProgramConstants()

Method Summary

Methods

Modifier and Type	Method and Description
static Interval	getInspectionIntervalAt(long center_location)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

VERSION_DATE

public static final java.lang.String VERSION_DATE

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Constant Field Values

VERSION_STRING

public static final java.lang.String VERSION_STRING

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Constant Field Values

CLIENT_PROGRAM_NAME

public static final java.lang.String CLIENT_PROGRAM_NAME

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Constant Field Values

PRINTABLE_CLIENT_PROGRAM_NAME

public static final java.lang.String PRINTABLE_CLIENT_PROGRAM_NAME

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Constant Field Values

CONFIGURATION_FOLDER

public static final java.lang.String CONFIGURATION_FOLDER

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Constant Field Values

CONFIGURATION_FILE

public static final java.lang.String CONFIGURATION_FILE

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Constant Field Values

SEYMOUR_HOME_ENV

public static final java.lang.String SEYMOUR_HOME_ENV

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Constant Field Values

USER_HOME_ENV

public static final java.lang.String USER_HOME_ENV

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Constant Field Values

VIS_SERVICE_PROGRAM_NAME

public static final java.lang.String VIS_SERVICE_PROGRAM_NAME

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Constant Field Values

HDF_SERVICE_PROGRAM_NAME

public static final java.lang.String HDF_SERVICE_PROGRAM_NAME

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Constant Field Values

JNLP_SERVICE_PROGRAM_NAME

public static final java.lang.String JNLP_SERVICE_PROGRAM_NAME

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Constant Field Values

VIS_SERVICE_URL

public static final java.lang.String VIS_SERVICE_URL

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Constant Field Values

HDF_SERVICE_URL

public static final java.lang.String HDF_SERVICE_URL

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Constant Field Values

JNLP_SERVICE_URL

public static final java.lang.String JNLP_SERVICE_URL

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Constant Field Values

DEFAULT_HOME_URL

public static final java.lang.String DEFAULT_HOME_URL

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Constant Field Values

USER_DEFAULT_DATA_DIRECTORY

public static final java.lang.String USER_DEFAULT_DATA_DIRECTORY

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Constant Field Values

USER_DEFAULT_PROJECTS_DIRECTORY

public static final java.lang.String USER_DEFAULT_PROJECTS_DIRECTORY

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Constant Field Values

USER_DEFAULT_GRAPHICS_DIRECTORY

public static final java.lang.String USER_DEFAULT_GRAPHICS_DIRECTORY

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Constant Field Values

USER_DEFAULT_ROIS_DIRECTORY

public static final java.lang.String USER_DEFAULT_ROIS_DIRECTORY

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Constant Field Values

DENOVO_REF_NAME

public static final java.lang.String DENOVO_REF_NAME

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Constant Field Values

HDF_SVC_GENERIC_ERROR

public static final java.lang.String HDF_SVC_GENERIC_ERROR

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Constant Field Values

HDF_SVC_FILE_NOT_FOUND_ERROR

public static final java.lang.String HDF_SVC_FILE_NOT_FOUND_ERROR

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Constant Field Values

RDF_JOB_METADATA_MARKER

public static final java.lang.String RDF_JOB_METADATA_MARKER

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Constant Field Values

XML_REFERENCE_INFO_NAME

public static final java.lang.String XML_REFERENCE_INFO_NAME

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Constant Field Values

XML_INFO_REFERENCE_MARKER

public static final java.lang.String XML_INFO_REFERENCE_MARKER

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Constant Field Values

HDF_ALIGNED_READS_MARKER

public static final java.lang.String HDF_ALIGNED_READS_MARKER

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Constant Field Values

DEFAULT_PROJECT_EXTENSION

public static final java.lang.String DEFAULT_PROJECT_EXTENSION

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Constant Field Values

DEFAULT_ROIS_EXTENSION

public static final java.lang.String DEFAULT_ROIS_EXTENSION

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Constant Field Values

NCBI_REFSEQ_GENES_MARKER

public static final java.lang.String NCBI_REFSEQ_GENES_MARKER

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Constant Field Values

GZIPPED_FILE_MARKER

public static final java.lang.String GZIPPED_FILE_MARKER

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Constant Field Values

HDF_ALIGNED_READS

public static final java.lang.String HDF_ALIGNED_READS

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Constant Field Values

HDF_ASSEMBLED_READS

public static final java.lang.String HDF_ASSEMBLED_READS

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Constant Field Values

HDF_ISOSEQ_READS

public static final java.lang.String HDF_ISOSEQ_READS

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Constant Field Values

HDF_ISOSEQ_FLNC_READS

public static final java.lang.String HDF_ISOSEQ_FLNC_READS

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Constant Field Values

HDF_ALIGNED_READS_MARTIN

public static final java.lang.String HDF_ALIGNED_READS_MARTIN

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Constant Field Values

HDF_ALIGNMENT_SUMMARY_GFF3

public static final java.lang.String HDF_ALIGNMENT_SUMMARY_GFF3

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Constant Field Values

HDF_ALIGNMENT_SUMMARY_GZIP_GFF3

public static final java.lang.String HDF_ALIGNMENT_SUMMARY_GZIP_GFF3

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Constant Field Values

HDF_ASSEMBLED_SUMMARY_GFF3

public static final java.lang.String HDF_ASSEMBLED_SUMMARY_GFF3

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Constant Field Values

HDF_ASSEMBLED_SUMMARY_GZIP_GFF3

public static final java.lang.String HDF_ASSEMBLED_SUMMARY_GZIP_GFF3

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Constant Field Values

HDF_SUMMARY_GFF3_MARKER

public static final java.lang.String HDF_SUMMARY_GFF3_MARKER

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Constant Field Values

HDF_SUMMARY_GFF3_GZIP_MARKER

public static final java.lang.String HDF_SUMMARY_GFF3_GZIP_MARKER

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Constant Field Values

HDF_MODIFICATIONS_GFF3

public static final java.lang.String HDF_MODIFICATIONS_GFF3

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Constant Field Values

HDF_MODIFICATIONS_GZIP_GFF3

public static final java.lang.String HDF_MODIFICATIONS_GZIP_GFF3

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Constant Field Values

HDF_MODIFICATIONS_GFF3_MARKER

public static final java.lang.String HDF_MODIFICATIONS_GFF3_MARKER

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Constant Field Values

HDF_MOTIFS_CSV

public static final java.lang.String HDF_MOTIFS_CSV

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Constant Field Values

HDF_GMAP_JOB_MARKER

public static final java.lang.String HDF_GMAP_JOB_MARKER

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Constant Field Values

HDF_MOTIFS_GFF3

public static final java.lang.String HDF_MOTIFS_GFF3

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Constant Field Values

HDF_MOTIFS_GZIP_GFF3

public static final java.lang.String HDF_MOTIFS_GZIP_GFF3

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Constant Field Values

HDF_MOTIFS_GFF3_MARKER

public static final java.lang.String HDF_MOTIFS_GFF3_MARKER

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Constant Field Values

HDF_VARIANTS_GFF3

public static final java.lang.String HDF_VARIANTS_GFF3

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Constant Field Values

HDF_VARIANTS_GZIP_GFF3

public static final java.lang.String HDF_VARIANTS_GZIP_GFF3

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Constant Field Values

HDF_VARIANTS_GFF3_MARKER

public static final java.lang.String HDF_VARIANTS_GFF3_MARKER

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Constant Field Values

HDF_VARIANTS_VCF

public static final java.lang.String HDF_VARIANTS_VCF

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Constant Field Values

HDF_VARIANTS_GZIP_VCF

public static final java.lang.String HDF_VARIANTS_GZIP_VCF

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Constant Field Values

HDF_VARIANTS_VCF_MARKER

public static final java.lang.String HDF_VARIANTS_VCF_MARKER

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Constant Field Values

HDF_VARIANTS_GATK_VCF

public static final java.lang.String HDF_VARIANTS_GATK_VCF

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Constant Field Values

HDF_VARIANTS_GZIP_GATK_VCF

public static final java.lang.String HDF_VARIANTS_GZIP_GATK_VCF

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Constant Field Values

HDF_VARIANTS_GATK_VCF_MARKER

public static final java.lang.String HDF_VARIANTS_GATK_VCF_MARKER

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Constant Field Values

EPIPRO_READS_MARKER_V1

public static final java.lang.String EPIPRO_READS_MARKER_V1

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Constant Field Values

EPIPRO_READS_MARKER_V2

public static final java.lang.String EPIPRO_READS_MARKER_V2

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Constant Field Values

HDF_EPIPRO_READS_V1

public static final java.lang.String HDF_EPIPRO_READS_V1

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Constant Field Values

HDF_EPIPRO_GZIP_READS_V1

public static final java.lang.String HDF_EPIPRO_GZIP_READS_V1

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Constant Field Values

HDF_EPIPRO_READS_V2

public static final java.lang.String HDF_EPIPRO_READS_V2

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Constant Field Values

HDF_EPIPRO_GZIP_READS_V2

public static final java.lang.String HDF_EPIPRO_GZIP_READS_V2

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Constant Field Values

HDF_EPIPRO_READS_MARKER_V1

public static final java.lang.String HDF_EPIPRO_READS_MARKER_V1

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Constant Field Values

HDF_EPIPRO_READS_MARKER_V2

public static final java.lang.String HDF_EPIPRO_READS_MARKER_V2

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Constant Field Values

EPIPRO_PROGRAM_NAME

public static final java.lang.String EPIPRO_PROGRAM_NAME

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Constant Field Values

DEFAULT_USER_DATA_DIRECTORY

public static final java.lang.String DEFAULT_USER_DATA_DIRECTORY

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Constant Field Values

VIOLET_USER_DATA_DIRECTORY

public static final java.lang.String VIOLET_USER_DATA_DIRECTORY

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Constant Field Values

DEFAULT_LAYOUT_FILE_NAME

public static final java.lang.String DEFAULT_LAYOUT_FILE_NAME

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Constant Field Values

SEYMOUR_CONFIG_XML_FILE

public static final java.lang.String SEYMOUR_CONFIG_XML_FILE

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Constant Field Values

REFERENCES_INDEX_XML_FILE

public static final java.lang.String REFERENCES_INDEX_XML_FILE

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Constant Field Values

FASTA_INDEX_EXTENSION

public static final java.lang.String FASTA_INDEX_EXTENSION

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Constant Field Values

FASTA_CONTIG_INDEX_EXTENSION

public static final java.lang.String FASTA_CONTIG_INDEX_EXTENSION

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Constant Field Values

CACHE_DIRECTORY

public static final java.lang.String CACHE_DIRECTORY

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Constant Field Values

METADATA_CACHE_EXTENSION

public static final java.lang.String METADATA_CACHE_EXTENSION

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Constant Field Values

VIOLET_HTML_HREF_TAG_NAVIGATE

public static final java.lang.String VIOLET_HTML_HREF_TAG_NAVIGATE

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Constant Field Values

DEFAULT_WEB_SEARCH

public static final java.lang.String DEFAULT_WEB_SEARCH

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Constant Field Values

PACBIO_HOME_URL

public static final java.lang.String PACBIO_HOME_URL

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Constant Field Values

PACBIO_DEVNET_URL

public static final java.lang.String PACBIO_DEVNET_URL

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Constant Field Values

URL_SEPARATOR

public static final java.lang.String URL_SEPARATOR

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Constant Field Values

S_LINUX_FILE_SEPARATOR

public static final java.lang.String S_LINUX_FILE_SEPARATOR

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Constant Field Values

S_WINDOWS_FILE_SEPARATOR

public static final java.lang.String S_WINDOWS_FILE_SEPARATOR

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Constant Field Values

LINUX_FILE_SEPARATOR

public static final char LINUX_FILE_SEPARATOR

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Constant Field Values

WINDOWS_FILE_SEPARATOR

public static final char WINDOWS_FILE_SEPARATOR

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Constant Field Values

NA

public static final java.lang.String NA

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Constant Field Values

WEB_SERVICES_DEFAULT_PORT

public static final java.lang.String WEB_SERVICES_DEFAULT_PORT

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Constant Field Values

GENERIC_HTTP_DEFAULT_PORT

public static final java.lang.String GENERIC_HTTP_DEFAULT_PORT

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Constant Field Values

WEB_SERVICES_CLIENT_TIMEOUT

public static final long WEB_SERVICES_CLIENT_TIMEOUT

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Constant Field Values

DEFAULT_VIEW_WIDTH

public static final int DEFAULT_VIEW_WIDTH

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Constant Field Values

DEFAULT_VIEW_HEIGHT

public static final int DEFAULT_VIEW_HEIGHT

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Constant Field Values

ABS_MIN_SCREEN_WIDTH

public static final int ABS_MIN_SCREEN_WIDTH

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Constant Field Values

ABS_MIN_SCREN__HEIGHT

public static final int ABS_MIN_SCREN__HEIGHT

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Constant Field Values

MIN_VIEW_RANGE

public static final int MIN_VIEW_RANGE

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Constant Field Values

MAX_VIEW_RANGE_EXTRA

public static final int MAX_VIEW_RANGE_EXTRA

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Constant Field Values

MAX_NUM_VIEW_HISTORY_ENTRIES

public static int MAX_NUM_VIEW_HISTORY_ENTRIES

PREVIOUS_ZOOM

public static final int PREVIOUS_ZOOM

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Constant Field Values

MIN_DELTA_FORCE_UPDATE_AFTER_ZOOM

public static final int MIN_DELTA_FORCE_UPDATE_AFTER_ZOOM

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Constant Field Values

HINTS_ANTIALIAS_ON

public static final java.awt.RenderingHints HINTS_ANTIALIAS_ON

DEFAULT_DETAILS_COARSE_MODE

public static final int DEFAULT_DETAILS_COARSE_MODE

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Constant Field Values

DEFAULT_DETAILS_VIEW_LIMITING_MODE

public static final int DEFAULT_DETAILS_VIEW_LIMITING_MODE

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Constant Field Values

DEFAULT_DETAILS_VIEW_DYNAMIC_SIZE

public static final int DEFAULT_DETAILS_VIEW_DYNAMIC_SIZE

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Constant Field Values

ABS_MAX_DETAILS_VIEW_DYNAMIC_SIZE

public static final int ABS_MAX_DETAILS_VIEW_DYNAMIC_SIZE

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Constant Field Values

DEFAULT_DETAILS_VIEW_FIXED_SIZE

public static final int DEFAULT_DETAILS_VIEW_FIXED_SIZE

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Constant Field Values

ABS_MAX_DETAILS_VIEW_FIXED_SIZE

public static final int ABS_MAX_DETAILS_VIEW_FIXED_SIZE

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Constant Field Values

DEFAULT_DETAILS_MAX_COVERAGE

public static final byte DEFAULT_DETAILS_MAX_COVERAGE

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Constant Field Values

ABS_MAX_DETAILS_MAX_COVERAGE

public static final byte ABS_MAX_DETAILS_MAX_COVERAGE

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Constant Field Values

MAX_INSPECTION_VIEW_REGION_SIZE

public static final int MAX_INSPECTION_VIEW_REGION_SIZE

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Constant Field Values

INSPECTION_VIEW_PRE_OFFSET

public static final int INSPECTION_VIEW_PRE_OFFSET

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Constant Field Values

INSPECTION_VIEW_POST_OFFSET

public static final int INSPECTION_VIEW_POST_OFFSET

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Constant Field Values

MAX_REQUEST_REFERENCE_LENGTH

public static final int MAX_REQUEST_REFERENCE_LENGTH

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Constant Field Values

MAX_CACHED_REFERENCE_LENGTH

public static final int MAX_CACHED_REFERENCE_LENGTH

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Constant Field Values

MAX_REQUEST_KINETOGRAM_LENGTH

public static final int MAX_REQUEST_KINETOGRAM_LENGTH

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Constant Field Values

MAX_CACHED_KINETOGRAM_LENGTH

public static final int MAX_CACHED_KINETOGRAM_LENGTH

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Constant Field Values

DEFAULT_BASE_MODS_FILTER_THRESHOLD

public static final int DEFAULT_BASE_MODS_FILTER_THRESHOLD

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Constant Field Values

LOW_BASE_MODS_THRESHOLD

public static final int LOW_BASE_MODS_THRESHOLD

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Constant Field Values

MID_BASE_MODS_THRESHOLD

public static final int MID_BASE_MODS_THRESHOLD

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Constant Field Values

NAMED_SERVERS_WHITELIST

public static final java.lang.String[] NAMED_SERVERS_WHITELIST

HUMAN_CHR_LENGTH

public static final int HUMAN_CHR_LENGTH

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Constant Field Values

TEST_EXTRA_GENE_TRACK

public static int TEST_EXTRA_GENE_TRACK

PAINT_USING_DECORATED_FRAME

public static boolean PAINT_USING_DECORATED_FRAME

SORT_ANNOTATION_DATA

public static boolean SORT_ANNOTATION_DATA

SORT_DENOVO_CONTIGS

public static boolean SORT_DENOVO_CONTIGS

ALWAYS_ADD_MAIN_SAMPLE

public static final boolean ALWAYS_ADD_MAIN_SAMPLE

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Constant Field Values

ENABLE_EPIPRO

public static final boolean ENABLE_EPIPRO

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Constant Field Values

ENABLE_VARIANTS_VCF

public static final boolean ENABLE_VARIANTS_VCF

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Constant Field Values

Constructor Detail

ProgramConstants

public ProgramConstants()

Method Detail

getInspectionIntervalAt

public static Interval getInspectionIntervalAt(long center_location)