| com.pacbio.secondary.vis.common.utils.exception |
Specialized exception handlers
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| com.pacbio.secondary.vis.data.db |
Ideogram and genes collections support
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| com.pacbio.secondary.vis.data.interval |
Support for genomic interval
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| com.pacbio.secondary.vis.data.variableresolution.model.gff |
GFF3 variable resolution data model
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| com.pacbio.secondary.vis.io.epipro |
Parser for epipro/unmapped reads data
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| com.pacbio.secondary.vis.io.gff |
GFF3 reader support
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| com.pacbio.secondary.vis.io.gff.modifications |
GFF3 Base Modifications Info support
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| com.pacbio.secondary.vis.io.gff.summary |
GFF3 Summary Info support
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| com.pacbio.secondary.vis.io.gff.variants |
GFF3 variants support
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| com.pacbio.secondary.vis.io.importer |
Local and remote data files import support
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| com.pacbio.secondary.vis.io.motifs |
Parser for Motifs files
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| com.pacbio.secondary.vis.io.ucsc.gtf.reader |
Parser for UCSC generated gtf (gene transfer format) files
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| com.pacbio.secondary.vis.io.vcf |
Parser for VCF (variants) files
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