com.pacbio.secondary.vis.data.contig

Class DeNovoContigInfo

java.lang.Object

com.pacbio.secondary.vis.data.contig.ContigInfo

com.pacbio.secondary.vis.data.contig.DeNovoContigInfo

All Implemented Interfaces:

java.lang.Comparable<DeNovoContigInfo>

public class DeNovoContigInfo
extends ContigInfo
implements java.lang.Comparable<DeNovoContigInfo>

Class holds summary info for one contig. Used by DeNovo

Author:

mmilletti

Field Summary

Fields

Modifier and Type	Field and Description
protected double[]	metrics

Fields inherited from class com.pacbio.secondary.vis.data.contig.ContigInfo

contig_length, header, id, name, sequence_file

Constructor Summary

Constructors

Constructor and Description
DeNovoContigInfo(java.lang.String name, java.lang.String id, int length, double[] metrics)

Method Summary

Methods

Modifier and Type	Method and Description
int	compareTo(DeNovoContigInfo o)
double	getMetric(int index)
double[]	getMetrics()

Methods inherited from class com.pacbio.secondary.vis.data.contig.ContigInfo

getContigLength, getContigMaxRange, getHeader, getId, getName, getSequenceFile, setContig_length, setHeader, setId, setName, setSequenceFile

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

metrics

protected double[] metrics

Constructor Detail

DeNovoContigInfo

public DeNovoContigInfo(java.lang.String name,
                java.lang.String id,
                int length,
                double[] metrics)

Method Detail

getMetrics

public double[] getMetrics()

getMetric

public double getMetric(int index)

compareTo

public int compareTo(DeNovoContigInfo o)

Specified by:

compareTo in interface java.lang.Comparable<DeNovoContigInfo>