Uses of Class
com.pacbio.secondary.vis.data.contig.ContigInfo

Packages that use ContigInfo

Package	Description
com.pacbio.secondary.vis.data.contig	Single, contiguous reference (contig)
com.pacbio.secondary.vis.data.xmlinfo	XML metadata files data models
com.pacbio.secondary.vis.io.epipro	Parser for epipro/unmapped reads data

Uses of ContigInfo in com.pacbio.secondary.vis.data.contig

Subclasses of ContigInfo in com.pacbio.secondary.vis.data.contig

Modifier and Type	Class and Description
class	DeNovoContigInfo Class holds summary info for one contig.

Uses of ContigInfo in com.pacbio.secondary.vis.data.xmlinfo

Methods in com.pacbio.secondary.vis.data.xmlinfo that return ContigInfo

Modifier and Type	Method and Description
ContigInfo[]	ReferenceInfo.getContigs_info_array()

Methods in com.pacbio.secondary.vis.data.xmlinfo with parameters of type ContigInfo

Modifier and Type	Method and Description
void	ReferenceInfo.setContigs_info_array(ContigInfo[] contigsInfoArray)

Uses of ContigInfo in com.pacbio.secondary.vis.io.epipro

Fields in com.pacbio.secondary.vis.io.epipro declared as ContigInfo

Modifier and Type	Field and Description
protected ContigInfo[]	EpiProReadsReader.contigs_info