Uses of Class
com.pacbio.secondary.vis.data.contig.DeNovoContigInfo

Packages that use DeNovoContigInfo

Package	Description
com.pacbio.secondary.vis.data.contig	Single, contiguous reference (contig)
com.pacbio.secondary.vis.data.session	Client side user session data models
com.pacbio.secondary.vis.data.table.model	Genomic tables data models

Uses of DeNovoContigInfo in com.pacbio.secondary.vis.data.contig

Methods in com.pacbio.secondary.vis.data.contig with parameters of type DeNovoContigInfo

Modifier and Type	Method and Description
int	DeNovoContigInfo.compareTo(DeNovoContigInfo o)

Uses of DeNovoContigInfo in com.pacbio.secondary.vis.data.session

Fields in com.pacbio.secondary.vis.data.session with type parameters of type DeNovoContigInfo

Modifier and Type	Field and Description
protected java.util.ArrayList<DeNovoContigInfo>	DeNovoSummaryStorage.contig_info

Methods in com.pacbio.secondary.vis.data.session that return DeNovoContigInfo

Modifier and Type	Method and Description
DeNovoContigInfo	DeNovoSummaryStorage.getContigSummaryInfo(int index) Called by DeNovo Table Model

Methods in com.pacbio.secondary.vis.data.session with parameters of type DeNovoContigInfo

Modifier and Type	Method and Description
void	DeNovoSummaryStorage.addContigSummaryInfo(DeNovoContigInfo info) Called by summary parser

Uses of DeNovoContigInfo in com.pacbio.secondary.vis.data.table.model

Methods in com.pacbio.secondary.vis.data.table.model that return DeNovoContigInfo

Modifier and Type	Method and Description
protected DeNovoContigInfo	TableModelDeNovo.getContigInfoFromRow(int row_index)