com.pacbio.secondary.vis.data.db

Class MotifData

java.lang.Object

com.pacbio.secondary.vis.data.db.MotifData

public class MotifData
extends java.lang.Object

stores stats about a motif

Author:

mmilletti

Field Summary

Fields

Modifier and Type	Field and Description
protected int	center_pos
protected double	fraction
protected double	mean_coverage
protected double	mean_ipd
protected double	mean_score
protected java.lang.String	motif
protected java.lang.String	motif_group
protected java.lang.String	motif_partner
protected int	n_detected
protected int	n_genome
protected double	obj_score

Constructor Summary

Constructors

Constructor and Description
MotifData()

Method Summary

Methods

Modifier and Type	Method and Description
int	getCenter_pos()
double	getFraction()
double	getMean_coverage()
double	getMean_ipd()
double	getMean_score()
java.lang.String	getMotif_group()
java.lang.String	getMotif_partner()
java.lang.String	getMotif()
int	getN_detected()
int	getN_genome()
double	getObj_score()
void	setCenter_pos(int center_pos)
void	setFraction(double fraction)
void	setMean_coverage(double mean_coverage)
void	setMean_ipd(double mean_ipd)
void	setMean_score(double mean_score)
void	setMotif_group(java.lang.String motif_group)
void	setMotif_partner(java.lang.String motif_partner)
void	setMotif(java.lang.String motif)
void	setN_detected(int n_detected)
void	setN_genome(int n_genome)
void	setObj_score(double obj_score)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

motif

protected java.lang.String motif

motif_group

protected java.lang.String motif_group

motif_partner

protected java.lang.String motif_partner

center_pos

protected int center_pos

n_detected

protected int n_detected

n_genome

protected int n_genome

fraction

protected double fraction

mean_ipd

protected double mean_ipd

mean_coverage

protected double mean_coverage

mean_score

protected double mean_score

obj_score

protected double obj_score

Constructor Detail

MotifData

public MotifData()

Method Detail

getMotif

public java.lang.String getMotif()

setMotif

public void setMotif(java.lang.String motif)

getMotif_group

public java.lang.String getMotif_group()

setMotif_group

public void setMotif_group(java.lang.String motif_group)

getMotif_partner

public java.lang.String getMotif_partner()

setMotif_partner

public void setMotif_partner(java.lang.String motif_partner)

getCenter_pos

public int getCenter_pos()

setCenter_pos

public void setCenter_pos(int center_pos)

getN_detected

public int getN_detected()

setN_detected

public void setN_detected(int n_detected)

getN_genome

public int getN_genome()

setN_genome

public void setN_genome(int n_genome)

getFraction

public double getFraction()

setFraction

public void setFraction(double fraction)

getMean_ipd

public double getMean_ipd()

setMean_ipd

public void setMean_ipd(double mean_ipd)

getMean_coverage

public double getMean_coverage()

setMean_coverage

public void setMean_coverage(double mean_coverage)

getMean_score

public double getMean_score()

setMean_score

public void setMean_score(double mean_score)

getObj_score

public double getObj_score()

setObj_score

public void setObj_score(double obj_score)