Uses of Class
com.pacbio.secondary.vis.data.graph.GraphStructure

Packages that use GraphStructure

Package	Description
com.pacbio.secondary.vis.data.session	Client side user session data models
com.pacbio.secondary.vis.svc.server.data	Server side data models
com.pacbio.secondary.vis.svc.server.hdf	HDFService utils

Uses of GraphStructure in com.pacbio.secondary.vis.data.session

Methods in com.pacbio.secondary.vis.data.session that return GraphStructure

Modifier and Type	Method and Description
GraphStructure	DetailsStorage.getGraphStructure()

Methods in com.pacbio.secondary.vis.data.session with parameters of type GraphStructure

Modifier and Type	Method and Description
void	DetailsStorage.setGraphStructure(GraphStructure s)

Uses of GraphStructure in com.pacbio.secondary.vis.svc.server.data

Fields in com.pacbio.secondary.vis.svc.server.data declared as GraphStructure

Modifier and Type	Field and Description
protected GraphStructure	WsResults.graph

Methods in com.pacbio.secondary.vis.svc.server.data that return GraphStructure

Modifier and Type	Method and Description
GraphStructure	WsResults.getGraph()

Methods in com.pacbio.secondary.vis.svc.server.data with parameters of type GraphStructure

Modifier and Type	Method and Description
void	WsResults.setGraph(GraphStructure structure)

Uses of GraphStructure in com.pacbio.secondary.vis.svc.server.hdf

Methods in com.pacbio.secondary.vis.svc.server.hdf that return GraphStructure

Modifier and Type	Method and Description
protected GraphStructure	GenomicDataAssembler.createGraphLinesStructure(GenomicDataStructures.WsReadStructure[] structures, int total_structures) Strobe reads as graphic lines
protected GraphStructure	GenomicDataAssembler.createGraphLinksStructure(GenomicDataStructures.WsReadStructure[] structures, int total_structures) CCS reads as graphic links
protected GraphStructure	GenomicDataAssembler.createGraphNodesStructure(GenomicDataStructures.WsReadStructure[] structures, int total_structures) Strobe reads as graphic nodes
protected GraphStructure	GenomicDataAssembler.createGraphStructure(WsResults results, GenomicDataStructures.WsReadStructure[] structures, int total_structures, int mode) Creates annotated graph structure from data