com.pacbio.secondary.vis.data.interval

Class IntervalTreeQuery

java.lang.Object

com.pacbio.secondary.vis.data.interval.IntervalTreeQuery

public class IntervalTreeQuery
extends java.lang.Object

Find nodes in an IntervalTree.

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
protected class	IntervalTreeQuery.FilterVisitor

Field Summary

Fields

Modifier and Type	Field and Description
protected IntervalTree	tree

Constructor Summary

Constructors

Constructor and Description
IntervalTreeQuery(IntervalTree tree)

Method Summary

Methods

Modifier and Type	Method and Description
java.util.ArrayList<IntervalTreeNode>	Query(Interval interval, byte minLevel, byte maxLevel) Finds all node intersecting the given Interval interval and with a level between minLevel and maxLevel.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

tree

protected IntervalTree tree

Constructor Detail

IntervalTreeQuery

public IntervalTreeQuery(IntervalTree tree)

Method Detail

Query

public java.util.ArrayList<IntervalTreeNode> Query(Interval interval,
                                          byte minLevel,
                                          byte maxLevel)

Finds all node intersecting the given Interval interval and with a level between minLevel and maxLevel.

Parameters:

interval -

minLevel -

maxLevel -

Returns:

A list of IntervalTreeNodes