Uses of Class
com.pacbio.secondary.vis.data.interval.IntervalTree

Packages that use IntervalTree

Package	Description
com.pacbio.secondary.vis.data.db	Ideogram and genes collections support
com.pacbio.secondary.vis.data.interval	Support for genomic interval
com.pacbio.secondary.vis.gui.draw.views	Genomic views

Uses of IntervalTree in com.pacbio.secondary.vis.data.db

Fields in com.pacbio.secondary.vis.data.db declared as IntervalTree

Modifier and Type	Field and Description
protected IntervalTree[]	IdeogramDB.tree

Methods in com.pacbio.secondary.vis.data.db that return IntervalTree

Modifier and Type	Method and Description
IntervalTree[]	IdeogramDB.getIdeogramDBTree()

Uses of IntervalTree in com.pacbio.secondary.vis.data.interval

Fields in com.pacbio.secondary.vis.data.interval declared as IntervalTree

Modifier and Type	Field and Description
protected IntervalTree	IntervalTreeQuery.tree

Constructors in com.pacbio.secondary.vis.data.interval with parameters of type IntervalTree

Constructor and Description
IntervalTreeQuery(IntervalTree tree)

Uses of IntervalTree in com.pacbio.secondary.vis.gui.draw.views

Methods in com.pacbio.secondary.vis.gui.draw.views that return IntervalTree

Modifier and Type	Method and Description
IntervalTree	GenomicViewData.getIdeogramTreeOfCurrentContig()