Uses of Class
com.pacbio.secondary.vis.data.interval.IntervalTreeNode

Packages that use IntervalTreeNode

Package	Description
com.pacbio.secondary.vis.data.interval	Support for genomic interval

Uses of IntervalTreeNode in com.pacbio.secondary.vis.data.interval

Fields in com.pacbio.secondary.vis.data.interval declared as IntervalTreeNode

Modifier and Type	Field and Description
protected IntervalTreeNode	IntervalTreeNode.parent
protected IntervalTreeNode	IntervalTree.root

Fields in com.pacbio.secondary.vis.data.interval with type parameters of type IntervalTreeNode

Modifier and Type	Field and Description
protected java.util.LinkedList<IntervalTreeNode>	IntervalTreeNode.children

Methods in com.pacbio.secondary.vis.data.interval that return IntervalTreeNode

Modifier and Type	Method and Description
IntervalTreeNode	IntervalTree.insert(Interval interval) Inserts a new interval into the tree so that each children will be contained in its parent interval.
protected IntervalTreeNode	IntervalTree.internalInsert(IntervalTreeNode node, Interval interval)

Methods in com.pacbio.secondary.vis.data.interval that return types with arguments of type IntervalTreeNode

Modifier and Type	Method and Description
java.util.ArrayList<IntervalTreeNode>	IntervalTreeQuery.FilterVisitor.getQueryResult()
java.util.ArrayList<IntervalTreeNode>	IntervalTreeQuery.Query(Interval interval, byte minLevel, byte maxLevel) Finds all node intersecting the given Interval interval and with a level between minLevel and maxLevel.

Methods in com.pacbio.secondary.vis.data.interval with parameters of type IntervalTreeNode

Modifier and Type	Method and Description
protected IntervalTreeNode	IntervalTree.internalInsert(IntervalTreeNode node, Interval interval)
void	IntervalTreeQuery.FilterVisitor.visit(int depth, IntervalTreeNode node)
void	IntervalTreeVisitor.visit(int depth, IntervalTreeNode node)