com.pacbio.secondary.vis.data.read

Class EpiProReadInfo.EpiProInfo

java.lang.Object

com.pacbio.secondary.vis.data.read.EpiProReadInfo.EpiProInfo

Enclosing class:

EpiProReadInfo

public class EpiProReadInfo.EpiProInfo
extends java.lang.Object

Author:

mmilletti

Field Summary

Fields

Modifier and Type	Field and Description
protected Locus	locus
protected int	subread_end
protected int	subread_start

Constructor Summary

Constructors

Constructor and Description
EpiProReadInfo.EpiProInfo(int contig, long from, long to, int strand, int subread_start, int subread_end)

Method Summary

Methods

Modifier and Type	Method and Description
int	getContig()
Interval	getInterval()
Locus	getLocus()
int	getSubreadEnd()
int	getSubreadLength()
int	getSubreadStart()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

locus

protected Locus locus

subread_start

protected int subread_start

subread_end

protected int subread_end

Constructor Detail

EpiProReadInfo.EpiProInfo

public EpiProReadInfo.EpiProInfo(int contig,
                         long from,
                         long to,
                         int strand,
                         int subread_start,
                         int subread_end)

Method Detail

getSubreadLength

public int getSubreadLength()

getLocus

public Locus getLocus()

getSubreadStart

public int getSubreadStart()

getSubreadEnd

public int getSubreadEnd()

getContig

public int getContig()

getInterval

public Interval getInterval()