com.pacbio.secondary.vis.data.session

Class DeNovoSummaryStorage

java.lang.Object

com.pacbio.secondary.vis.data.session.DeNovoSummaryStorage

public class DeNovoSummaryStorage
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
protected java.util.ArrayList<java.lang.String>	column_names
protected java.util.ArrayList<DeNovoContigInfo>	contig_info

Constructor Summary

Constructors

Constructor and Description
DeNovoSummaryStorage()

Method Summary

Methods

Modifier and Type	Method and Description
void	addContigSummaryInfo(DeNovoContigInfo info) Called by summary parser
java.lang.String[]	getColumnNames()
DeNovoContigInfo	getContigSummaryInfo(int index) Called by DeNovo Table Model
protected void	initColumNames()
void	setContigMetricsLabels(java.lang.String metrics) Called by summary parser
int	size()
void	sort()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

contig_info

protected java.util.ArrayList<DeNovoContigInfo> contig_info

column_names

protected java.util.ArrayList<java.lang.String> column_names

Constructor Detail

DeNovoSummaryStorage

public DeNovoSummaryStorage()

Method Detail

initColumNames

protected void initColumNames()

size

public int size()

Returns:

getColumnNames

public java.lang.String[] getColumnNames()

setContigMetricsLabels

public void setContigMetricsLabels(java.lang.String metrics)

Called by summary parser

Parameters:

metrics -

sort

public void sort()

addContigSummaryInfo

public void addContigSummaryInfo(DeNovoContigInfo info)

Called by summary parser

Parameters:

info -

getContigSummaryInfo

public DeNovoContigInfo getContigSummaryInfo(int index)

Called by DeNovo Table Model

Parameters:

index -

Returns: