com.pacbio.secondary.vis.data.session

Class IPDConsensusStorage

java.lang.Object

com.pacbio.secondary.vis.data.session.IPDConsensusStorage

public class IPDConsensusStorage
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
IPDConsensusStorage()

Method Summary

Methods

Modifier and Type	Method and Description
boolean	acceptNewDataAndClear(GenomicViewDetailsData view, int view_contig, Interval view_visible_range, java.lang.String data)
void	clear()
boolean	contains(Interval int_visible_range) custom method to check if requested visible interval is available takes into account that visible range can start from 0, while coordinates are 1-based
Locus	getIPDConsensus_locus()
float	getIPDFwd(long pos)
float	getIPDRev(long pos)
int	getLength()
double	getMaxIPDInInterval(Interval interval)
boolean	intersects(int viewContig, Interval int_visible_range)
boolean	setIPDConsensus_data(int[] ipd_ratio)
void	setReference_locus(Locus ipd_consensus_locus)
int	size()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IPDConsensusStorage

public IPDConsensusStorage()

Method Detail

getIPDConsensus_locus

public Locus getIPDConsensus_locus()

setReference_locus

public void setReference_locus(Locus ipd_consensus_locus)

getIPDFwd

public float getIPDFwd(long pos)

getIPDRev

public float getIPDRev(long pos)

getLength

public int getLength()

clear

public void clear()

size

public int size()

intersects

public boolean intersects(int viewContig,
                 Interval int_visible_range)

acceptNewDataAndClear

public boolean acceptNewDataAndClear(GenomicViewDetailsData view,
                            int view_contig,
                            Interval view_visible_range,
                            java.lang.String data)

setIPDConsensus_data

public boolean setIPDConsensus_data(int[] ipd_ratio)

getMaxIPDInInterval

public double getMaxIPDInInterval(Interval interval)

contains

public boolean contains(Interval int_visible_range)

custom method to check if requested visible interval is available takes into account that visible range can start from 0, while coordinates are 1-based

Parameters:

int_visible_range -

Returns: