com.pacbio.secondary.vis.data.session.options

Class CommandLineOptions

java.lang.Object

com.pacbio.secondary.vis.data.session.options.CommandLineOptions

public class CommandLineOptions
extends java.lang.Object

Author:

mmilletti

Field Summary

Fields

Modifier and Type	Field and Description
protected java.lang.String[]	args
static java.lang.String	CMD_LINE_ANNOTATION
static java.lang.String	CMD_LINE_CIRCULAR
static java.lang.String	CMD_LINE_CLOUD
static java.lang.String	CMD_LINE_CUR_SESSION
static java.lang.String	CMD_LINE_CUR_WORKSPACE
static java.lang.String	CMD_LINE_DATA
static java.lang.String	CMD_LINE_DESKTOP
static java.lang.String	CMD_LINE_GROUPS
static java.lang.String	CMD_LINE_HOST_URL
static java.lang.String	CMD_LINE_JNLP_SERVICE
static java.lang.String	CMD_LINE_JOB_METADATA
static java.lang.String	CMD_LINE_OPTIONS
static java.lang.String	CMD_LINE_OPTIONS_SEPARATOR
static java.lang.String	CMD_LINE_REFERENCE
static java.lang.String	CMD_LINE_SAMPLE
static java.lang.String	CMD_LINE_SEPARATOR
static java.lang.String	CMD_LINE_SESSION_TAG
static java.lang.String	CMD_LINE_SUMMARY_ONLY
static java.lang.String	CMD_LINE_TEMPLATE
static java.lang.String	CMD_LINE_TEST_BROWSER
static java.lang.String	CMD_LINE_TRACKS
static java.lang.String	CMD_LINE_USER
static java.lang.String	CMD_LINE_VIS_PORT
static java.lang.String	CMD_LINE_WORKSPACE_TAG

Constructor Summary

Constructors

Constructor and Description
CommandLineOptions(java.lang.String[] args)

Method Summary

Methods

Modifier and Type	Method and Description
java.lang.String	getAnnotation()
java.lang.String[]	getArgs()
java.lang.String	getData()
java.lang.String	getHostURL()
java.lang.String	getJobMetadata()
java.lang.String	getOptions()
java.lang.String	getReference()
java.lang.String	getSample()
java.lang.String	getSession()
long	getSMRTCloudFileSize() returns expected data file size
java.lang.String	getTemplate()
java.lang.String	getTracks()
java.lang.String	getUser()
java.lang.String	getVisPort()
java.lang.String	getWorkspace()
boolean	isCircular()
boolean	isDesktop()
boolean	isEnableTestWebBrowser()
boolean	isSMRTCloud()
boolean	isSMRTGroups()
boolean	isSMRTJNLP()
boolean	isSummaryOnly()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

CMD_LINE_SEPARATOR

public static final java.lang.String CMD_LINE_SEPARATOR

See Also:

Constant Field Values

CMD_LINE_OPTIONS_SEPARATOR

public static final java.lang.String CMD_LINE_OPTIONS_SEPARATOR

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Constant Field Values

CMD_LINE_HOST_URL

public static final java.lang.String CMD_LINE_HOST_URL

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Constant Field Values

CMD_LINE_DATA

public static final java.lang.String CMD_LINE_DATA

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Constant Field Values

CMD_LINE_REFERENCE

public static final java.lang.String CMD_LINE_REFERENCE

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Constant Field Values

CMD_LINE_TEMPLATE

public static final java.lang.String CMD_LINE_TEMPLATE

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Constant Field Values

CMD_LINE_JOB_METADATA

public static final java.lang.String CMD_LINE_JOB_METADATA

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Constant Field Values

CMD_LINE_SAMPLE

public static final java.lang.String CMD_LINE_SAMPLE

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Constant Field Values

CMD_LINE_USER

public static final java.lang.String CMD_LINE_USER

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Constant Field Values

CMD_LINE_OPTIONS

public static final java.lang.String CMD_LINE_OPTIONS

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Constant Field Values

CMD_LINE_TRACKS

public static final java.lang.String CMD_LINE_TRACKS

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Constant Field Values

CMD_LINE_ANNOTATION

public static final java.lang.String CMD_LINE_ANNOTATION

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Constant Field Values

CMD_LINE_VIS_PORT

public static final java.lang.String CMD_LINE_VIS_PORT

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Constant Field Values

CMD_LINE_WORKSPACE_TAG

public static final java.lang.String CMD_LINE_WORKSPACE_TAG

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Constant Field Values

CMD_LINE_SESSION_TAG

public static final java.lang.String CMD_LINE_SESSION_TAG

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Constant Field Values

CMD_LINE_CUR_WORKSPACE

public static final java.lang.String CMD_LINE_CUR_WORKSPACE

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Constant Field Values

CMD_LINE_CUR_SESSION

public static final java.lang.String CMD_LINE_CUR_SESSION

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Constant Field Values

CMD_LINE_DESKTOP

public static final java.lang.String CMD_LINE_DESKTOP

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Constant Field Values

CMD_LINE_CIRCULAR

public static final java.lang.String CMD_LINE_CIRCULAR

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Constant Field Values

CMD_LINE_CLOUD

public static final java.lang.String CMD_LINE_CLOUD

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Constant Field Values

CMD_LINE_GROUPS

public static final java.lang.String CMD_LINE_GROUPS

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Constant Field Values

CMD_LINE_JNLP_SERVICE

public static final java.lang.String CMD_LINE_JNLP_SERVICE

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Constant Field Values

CMD_LINE_SUMMARY_ONLY

public static final java.lang.String CMD_LINE_SUMMARY_ONLY

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Constant Field Values

CMD_LINE_TEST_BROWSER

public static final java.lang.String CMD_LINE_TEST_BROWSER

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Constant Field Values

args

protected java.lang.String[] args

Constructor Detail

CommandLineOptions

public CommandLineOptions(java.lang.String[] args)

Method Detail

getArgs

public java.lang.String[] getArgs()

getData

public java.lang.String getData()

getTracks

public java.lang.String getTracks()

getAnnotation

public java.lang.String getAnnotation()

getReference

public java.lang.String getReference()

getJobMetadata

public java.lang.String getJobMetadata()

getTemplate

public java.lang.String getTemplate()

getOptions

public java.lang.String getOptions()

getSession

public java.lang.String getSession()

getWorkspace

public java.lang.String getWorkspace()

getSample

public java.lang.String getSample()

getUser

public java.lang.String getUser()

getHostURL

public java.lang.String getHostURL()

getVisPort

public java.lang.String getVisPort()

isDesktop

public boolean isDesktop()

isCircular

public boolean isCircular()

isSummaryOnly

public boolean isSummaryOnly()

isEnableTestWebBrowser

public boolean isEnableTestWebBrowser()

isSMRTGroups

public boolean isSMRTGroups()

isSMRTCloud

public boolean isSMRTCloud()

isSMRTJNLP

public boolean isSMRTJNLP()

getSMRTCloudFileSize

public long getSMRTCloudFileSize()

returns expected data file size

Returns: