| Package | Description |
|---|---|
| com.pacbio.secondary.vis.data.session |
Client side user session data models
|
| com.pacbio.secondary.vis.data.table.model |
Genomic tables data models
|
| com.pacbio.secondary.vis.gui.app |
Main application classes, support local, remote, webstart based deployment
|
| com.pacbio.secondary.vis.gui.dialogs |
Application dialogs
|
| com.pacbio.secondary.vis.gui.draw.views |
Genomic views
|
| com.pacbio.secondary.vis.gui.frame |
Client application main frame
|
| com.pacbio.secondary.vis.io.export |
GFF3 export support
|
| com.pacbio.secondary.vis.io.gff.summary |
GFF3 Summary Info support
|
| com.pacbio.secondary.vis.io.update |
Support for interactive data updates after user preferences changes
|
| Class and Description |
|---|
| DataStorageBase |
| DeNovoSummaryStorage |
| RegionsOfInterestStorage |
| RegionsOfInterestStorage.RegionOfInterest |
| SessionDataHelper
Helper class for writing/reading user session data to xml
Session data is embedded inside an app's project file using base64 encoding
Member variables of this class should not be removed for compatibility with previous versions
New member variables can be added, their value is not affected when reading from previous versions' serialized data
|
| Class and Description |
|---|
| DataStorage |
| DeNovoSummaryStorage |
| Class and Description |
|---|
| DataStorage |
| RegionsOfInterestStorage |
| Class and Description |
|---|
| RegionsOfInterestStorage |
| Class and Description |
|---|
| DataStorage |
| DetailsStorage |
| IPDConsensusStorage |
| ReferenceSequenceStorage |
| Class and Description |
|---|
| DataStorage |
| Class and Description |
|---|
| DetailsStorage |
| Class and Description |
|---|
| DeNovoSummaryStorage |
| Class and Description |
|---|
| DetailsStorage |
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