com.pacbio.secondary.vis.data.table.model

Class TableModelAnnotations

java.lang.Object

javax.swing.table.AbstractTableModel

com.pacbio.secondary.vis.data.table.model.TableModelBase

com.pacbio.secondary.vis.data.table.model.TableModelAnnotations

All Implemented Interfaces:

java.io.Serializable, javax.swing.table.TableModel

public class TableModelAnnotations
extends TableModelBase

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected java.lang.String[]	column_names
protected java.lang.String[]	column_names_multicontig
protected java.lang.String[]	column_names_singlecontig
protected int	contig_column_index
protected int[][]	global_rows_cache
protected int	num_total_rows
protected int	qv_column_index
protected int[]	slots_rows_cache

Fields inherited from class com.pacbio.secondary.vis.data.table.model.TableModelBase

d_temp, int_temp, main_app, str_temp

Fields inherited from class javax.swing.table.AbstractTableModel

listenerList

Constructor Summary

Constructors

Constructor and Description
TableModelAnnotations(VioletApp app)

Method Summary

Methods

Modifier and Type	Method and Description
java.lang.String[]	getColumnNames()
protected java.lang.String	getContigNameFromRowIndex(int row_index)
protected DataStorage	getDataStorage()
MarkerCollection	getMarkerCollectionFromRowIndex(int row_index) Override to return marker collection at this row
Marker	getMarkerFromRowIndex(int row_index) Override to return marker at this row
int	getRowCount()
Interval	getRowInterval(int row_index) Returns the interval associated with this row
protected java.util.Vector<VariableResolutionDataSet>	getSlotsDatasets()
java.lang.Object	getValueAt(int rowIndex, int columnIndex)
void	setAnnotations() resets num rows, creates local cache

Methods inherited from class com.pacbio.secondary.vis.data.table.model.TableModelBase

binarySearchLastOccurrence, getColumnClass, getColumnCount, getColumnName, getConfidenceFromRowIndex, getMarkerTypeFromRowIndex, getView, getVioletApp

Methods inherited from class javax.swing.table.AbstractTableModel

addTableModelListener, findColumn, fireTableCellUpdated, fireTableChanged, fireTableDataChanged, fireTableRowsDeleted, fireTableRowsInserted, fireTableRowsUpdated, fireTableStructureChanged, getListeners, getTableModelListeners, isCellEditable, removeTableModelListener, setValueAt

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

num_total_rows

protected int num_total_rows

global_rows_cache

protected int[][] global_rows_cache

slots_rows_cache

protected int[] slots_rows_cache

column_names

protected java.lang.String[] column_names

contig_column_index

protected int contig_column_index

qv_column_index

protected int qv_column_index

column_names_multicontig

protected final java.lang.String[] column_names_multicontig

column_names_singlecontig

protected final java.lang.String[] column_names_singlecontig

Constructor Detail

TableModelAnnotations

public TableModelAnnotations(VioletApp app)

Parameters:

app -

Method Detail

getValueAt

public java.lang.Object getValueAt(int rowIndex,
                          int columnIndex)

getColumnNames

public java.lang.String[] getColumnNames()

Specified by:

getColumnNames in class TableModelBase

getRowCount

public int getRowCount()

getContigNameFromRowIndex

protected java.lang.String getContigNameFromRowIndex(int row_index)

Parameters:

row_index -

Returns:

getMarkerCollectionFromRowIndex

public MarkerCollection getMarkerCollectionFromRowIndex(int row_index)

Description copied from class: TableModelBase

Override to return marker collection at this row

Overrides:

getMarkerCollectionFromRowIndex in class TableModelBase

Returns:

getMarkerFromRowIndex

public Marker getMarkerFromRowIndex(int row_index)

Description copied from class: TableModelBase

Override to return marker at this row

Overrides:

getMarkerFromRowIndex in class TableModelBase

Parameters:

row_index -

Returns:

getDataStorage

protected DataStorage getDataStorage()

getSlotsDatasets

protected java.util.Vector<VariableResolutionDataSet> getSlotsDatasets()

setAnnotations

public void setAnnotations()

resets num rows, creates local cache

getRowInterval

public Interval getRowInterval(int row_index)

Returns the interval associated with this row

Overrides:

getRowInterval in class TableModelBase

Returns: