com.pacbio.secondary.vis.data.table.model

Class TableModelBase

java.lang.Object

javax.swing.table.AbstractTableModel

com.pacbio.secondary.vis.data.table.model.TableModelBase

All Implemented Interfaces:

java.io.Serializable, javax.swing.table.TableModel

Direct Known Subclasses:

TableModelAnnotations, TableModelDeNovo, TableModelGenomicInterval, TableModelTrack

public abstract class TableModelBase
extends javax.swing.table.AbstractTableModel

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected java.lang.Double	d_temp
protected java.lang.Integer	int_temp
protected VioletApp	main_app
protected java.lang.String	str_temp

Fields inherited from class javax.swing.table.AbstractTableModel

listenerList

Constructor Summary

Constructors

Constructor and Description
TableModelBase(VioletApp app)

Method Summary

Methods

Modifier and Type	Method and Description
protected int	binarySearchLastOccurrence(int[] ar, int key) Extend binary search to return index of last occurrence of key if sorted array contains multiple key instances.
java.lang.Class<?>	getColumnClass(int c)
int	getColumnCount()
java.lang.String	getColumnName(int col)
abstract java.lang.String[]	getColumnNames()
protected int	getConfidenceFromRowIndex(int row_index) work in progress
MarkerCollection	getMarkerCollectionFromRowIndex(int row_index) Override to return marker collection at this row
Marker	getMarkerFromRowIndex(int row_index) Override to return marker at this row
protected java.lang.String	getMarkerTypeFromRowIndex(int row_index)
Interval	getRowInterval(int row_index) Override to return the interval associated with this row
GenomicViewEvents	getView() Override to return the view currently associated with this table
VioletApp	getVioletApp() return the app

Methods inherited from class javax.swing.table.AbstractTableModel

addTableModelListener, findColumn, fireTableCellUpdated, fireTableChanged, fireTableDataChanged, fireTableRowsDeleted, fireTableRowsInserted, fireTableRowsUpdated, fireTableStructureChanged, getListeners, getTableModelListeners, isCellEditable, removeTableModelListener, setValueAt

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface javax.swing.table.TableModel

getRowCount, getValueAt

Field Detail

str_temp

protected java.lang.String str_temp

int_temp

protected java.lang.Integer int_temp

d_temp

protected java.lang.Double d_temp

main_app

protected VioletApp main_app

Constructor Detail

TableModelBase

public TableModelBase(VioletApp app)

Parameters:

app -

Method Detail

getColumnNames

public abstract java.lang.String[] getColumnNames()

getColumnCount

public int getColumnCount()

getColumnName

public java.lang.String getColumnName(int col)

Specified by:

getColumnName in interface javax.swing.table.TableModel

Overrides:

getColumnName in class javax.swing.table.AbstractTableModel

getColumnClass

public java.lang.Class<?> getColumnClass(int c)

Specified by:

getColumnClass in interface javax.swing.table.TableModel

Overrides:

getColumnClass in class javax.swing.table.AbstractTableModel

getView

public GenomicViewEvents getView()

Override to return the view currently associated with this table

Returns:

getRowInterval

public Interval getRowInterval(int row_index)

Override to return the interval associated with this row

Returns:

getMarkerFromRowIndex

public Marker getMarkerFromRowIndex(int row_index)

Override to return marker at this row

Parameters:

row_index -

Returns:

getMarkerCollectionFromRowIndex

public MarkerCollection getMarkerCollectionFromRowIndex(int row_index)

Override to return marker collection at this row

Parameters:

row_index -

Returns:

getVioletApp

public final VioletApp getVioletApp()

return the app

Returns:

binarySearchLastOccurrence

protected int binarySearchLastOccurrence(int[] ar,
                             int key)

Extend binary search to return index of last occurrence of key if sorted array contains multiple key instances.

Parameters:

ar -

key -

Returns:

getConfidenceFromRowIndex

protected int getConfidenceFromRowIndex(int row_index)

work in progress

Parameters:

row_index -

Returns:

getMarkerTypeFromRowIndex

protected java.lang.String getMarkerTypeFromRowIndex(int row_index)

Parameters:

row_index -

Returns: