com.pacbio.secondary.vis.data.table.model

Class TableModelDeNovo

java.lang.Object

javax.swing.table.AbstractTableModel

com.pacbio.secondary.vis.data.table.model.TableModelBase

com.pacbio.secondary.vis.data.table.model.TableModelDeNovo

All Implemented Interfaces:

java.io.Serializable, javax.swing.table.TableModel

public class TableModelDeNovo
extends TableModelBase

See Also:

Serialized Form

Field Summary

Fields inherited from class com.pacbio.secondary.vis.data.table.model.TableModelBase

d_temp, int_temp, main_app, str_temp

Fields inherited from class javax.swing.table.AbstractTableModel

listenerList

Constructor Summary

Constructors

Constructor and Description
TableModelDeNovo(VioletApp app)

Method Summary

Methods

Modifier and Type	Method and Description
java.lang.String[]	getColumnNames() Use denovo summary data
protected DeNovoContigInfo	getContigInfoFromRow(int row_index)
int	getRowCount()
protected DeNovoSummaryStorage	getSummaryStorage()
java.lang.Object	getValueAt(int rowIndex, int columnIndex) Only the first three columns are fixed, the remaining ones are loaded at runtime from the summary.gff file

Methods inherited from class com.pacbio.secondary.vis.data.table.model.TableModelBase

binarySearchLastOccurrence, getColumnClass, getColumnCount, getColumnName, getConfidenceFromRowIndex, getMarkerCollectionFromRowIndex, getMarkerFromRowIndex, getMarkerTypeFromRowIndex, getRowInterval, getView, getVioletApp

Methods inherited from class javax.swing.table.AbstractTableModel

addTableModelListener, findColumn, fireTableCellUpdated, fireTableChanged, fireTableDataChanged, fireTableRowsDeleted, fireTableRowsInserted, fireTableRowsUpdated, fireTableStructureChanged, getListeners, getTableModelListeners, isCellEditable, removeTableModelListener, setValueAt

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TableModelDeNovo

public TableModelDeNovo(VioletApp app)

Parameters:

app -

Method Detail

getValueAt

public java.lang.Object getValueAt(int rowIndex,
                          int columnIndex)

Only the first three columns are fixed, the remaining ones are loaded at runtime from the summary.gff file

getColumnNames

public java.lang.String[] getColumnNames()

Use denovo summary data

Specified by:

getColumnNames in class TableModelBase

getRowCount

public int getRowCount()

getSummaryStorage

protected DeNovoSummaryStorage getSummaryStorage()

getContigInfoFromRow

protected DeNovoContigInfo getContigInfoFromRow(int row_index)