com.pacbio.secondary.vis.data.table.model

Class TableModelGenomicInterval

java.lang.Object

javax.swing.table.AbstractTableModel

com.pacbio.secondary.vis.data.table.model.TableModelBase

com.pacbio.secondary.vis.data.table.model.TableModelGenomicInterval

All Implemented Interfaces:

java.io.Serializable, javax.swing.table.TableModel

public class TableModelGenomicInterval
extends TableModelBase

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected java.lang.String[]	column_names
protected GenomicViewEvents	current_view

Fields inherited from class com.pacbio.secondary.vis.data.table.model.TableModelBase

d_temp, int_temp, main_app, str_temp

Fields inherited from class javax.swing.table.AbstractTableModel

listenerList

Constructor Summary

Constructors

Constructor and Description
TableModelGenomicInterval(VioletApp app)

Method Summary

Methods

Modifier and Type	Method and Description
java.lang.String[]	getColumnNames()
MarkerCollection	getMarkerCollectionFromRowIndex(int row_index) Override to return marker collection at this row
Marker	getMarkerFromRowIndex(int row_index) Override to return marker at this row
int	getRowCount()
Interval	getRowInterval(int row_index) Return the interval associated with this row
java.lang.Object	getValueAt(int rowIndex, int columnIndex)
GenomicViewEvents	getView() Override to return the view currently associated with this table
void	setGenomicView(GenomicViewEvents view)

Methods inherited from class com.pacbio.secondary.vis.data.table.model.TableModelBase

binarySearchLastOccurrence, getColumnClass, getColumnCount, getColumnName, getConfidenceFromRowIndex, getMarkerTypeFromRowIndex, getVioletApp

Methods inherited from class javax.swing.table.AbstractTableModel

addTableModelListener, findColumn, fireTableCellUpdated, fireTableChanged, fireTableDataChanged, fireTableRowsDeleted, fireTableRowsInserted, fireTableRowsUpdated, fireTableStructureChanged, getListeners, getTableModelListeners, isCellEditable, removeTableModelListener, setValueAt

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

current_view

protected GenomicViewEvents current_view

column_names

protected final java.lang.String[] column_names

Constructor Detail

TableModelGenomicInterval

public TableModelGenomicInterval(VioletApp app)

Parameters:

app -

Method Detail

getValueAt

public java.lang.Object getValueAt(int rowIndex,
                          int columnIndex)

setGenomicView

public void setGenomicView(GenomicViewEvents view)

Parameters:

view -

getMarkerCollectionFromRowIndex

public MarkerCollection getMarkerCollectionFromRowIndex(int row_index)

Description copied from class: TableModelBase

Override to return marker collection at this row

Overrides:

getMarkerCollectionFromRowIndex in class TableModelBase

Parameters:

row_index -

Returns:

getMarkerFromRowIndex

public Marker getMarkerFromRowIndex(int row_index)

Description copied from class: TableModelBase

Override to return marker at this row

Overrides:

getMarkerFromRowIndex in class TableModelBase

Parameters:

row_index -

Returns:

getRowCount

public int getRowCount()

getColumnNames

public java.lang.String[] getColumnNames()

Specified by:

getColumnNames in class TableModelBase

getView

public GenomicViewEvents getView()

Description copied from class: TableModelBase

Override to return the view currently associated with this table

Overrides:

getView in class TableModelBase

Returns:

getRowInterval

public Interval getRowInterval(int row_index)

Return the interval associated with this row

Overrides:

getRowInterval in class TableModelBase

Returns: