com.pacbio.secondary.vis.data.variableresolution.model

Class VariableResolutionDataModel

java.lang.Object

com.pacbio.secondary.vis.data.base.BaseDataModel

com.pacbio.secondary.vis.data.variableresolution.model.VariableResolutionDataModel

All Implemented Interfaces:

IVariableResolutionDataModelServer, IChangeNotifier, java.lang.Iterable<VariableValuesDataRecord>

Direct Known Subclasses:

GFFDataModel, VariableResolutionDataModelsMerger, VariableResolutionDataSet, VariableResolutionMemoryDataModel

public abstract class VariableResolutionDataModel
extends BaseDataModel
implements IVariableResolutionDataModelServer

Author:

Marco Milletti

Nested Class Summary

Nested classes/interfaces inherited from class com.pacbio.secondary.vis.data.base.BaseDataModel

BaseDataModel.eDataType

Field Summary

Fields inherited from class com.pacbio.secondary.vis.data.base.BaseDataModel

changeNotifier, data_type, mc

Constructor Summary

Constructors

Constructor and Description
VariableResolutionDataModel()
VariableResolutionDataModel(BaseDataModel.eDataType type, int num_chromosomes)

Method Summary

Methods

Modifier and Type	Method and Description
MarkerCollection[]	copyAsMarkerCollectionArray() Creates copy of a variableresolution model as a MarkerCollection array.
void	detach()
int	getNumItems()
float	getResult(int idx, int which)
float[]	getResults(int idx)
java.util.Iterator<VariableValuesDataRecord>	iterator()

Methods inherited from class com.pacbio.secondary.vis.data.base.BaseDataModel

addChangeListener, fireChangeEvent, getDataType, getDataTypeAsString, getMarkersForContig, getNumContigs, hasData, isMarkerType, isModificationsType, isReadsType, isSummaryType, isVariantsType, removeChangeListener, setTypeAndNumContigs

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface com.pacbio.secondary.vis.data.variableresolution.model.IVariableResolutionDataModelServer

get, getDataInfo, getFileHeader, getFilePath, getMinMaxValues, size, toCollection

Methods inherited from interface com.pacbio.secondary.vis.gui.evt.IChangeNotifier

addChangeListener, removeChangeListener

Constructor Detail

VariableResolutionDataModel

public VariableResolutionDataModel()

VariableResolutionDataModel

public VariableResolutionDataModel(BaseDataModel.eDataType type,
                           int num_chromosomes)

Method Detail

copyAsMarkerCollectionArray

public MarkerCollection[] copyAsMarkerCollectionArray()

Creates copy of a variableresolution model as a MarkerCollection array. TODO: This intermediate step should be removed in future versions.

Specified by:

copyAsMarkerCollectionArray in interface IVariableResolutionDataModelServer

Returns:

A marker collection.

getResult

public float getResult(int idx,
              int which)

Specified by:

getResult in interface IVariableResolutionDataModelServer

getResults

public float[] getResults(int idx)

Specified by:

getResults in interface IVariableResolutionDataModelServer

detach

public void detach()

Specified by:

detach in interface IVariableResolutionDataModelServer

iterator

public java.util.Iterator<VariableValuesDataRecord> iterator()

Specified by:

iterator in interface java.lang.Iterable<VariableValuesDataRecord>

getNumItems

public int getNumItems()