com.pacbio.secondary.vis.data.variableresolution.model

Class VariableResolutionMemoryDataModel

java.lang.Object

com.pacbio.secondary.vis.data.base.BaseDataModel

com.pacbio.secondary.vis.data.variableresolution.model.VariableResolutionDataModel

com.pacbio.secondary.vis.data.variableresolution.model.VariableResolutionMemoryDataModel

All Implemented Interfaces:

IVariableResolutionDataModelServer, IChangeNotifier, java.lang.Iterable<VariableValuesDataRecord>

public class VariableResolutionMemoryDataModel
extends VariableResolutionDataModel

Nested Class Summary

Nested classes/interfaces inherited from class com.pacbio.secondary.vis.data.base.BaseDataModel

BaseDataModel.eDataType

Field Summary

Fields inherited from class com.pacbio.secondary.vis.data.base.BaseDataModel

changeNotifier, data_type, mc

Constructor Summary

Constructors

Constructor and Description
VariableResolutionMemoryDataModel()

Method Summary

Methods

Modifier and Type	Method and Description
VariableValuesDataRecord	get(int j)
java.util.LinkedList<java.lang.String>	getDataInfo()
java.util.LinkedList<java.lang.String>	getFileHeader()
java.util.LinkedList<java.lang.String>	getFilePath()
VariableResolutionDataSetValues	getMinMaxValues()
java.util.ArrayList<VariableValuesDataRecord>	getRecords()
void	setFileName(java.lang.String info)
void	setRecords(java.util.ArrayList<VariableValuesDataRecord> records)
int	size() Returns the overall number of markers.
java.util.Collection<VariableValuesDataRecord>	toCollection()

Methods inherited from class com.pacbio.secondary.vis.data.variableresolution.model.VariableResolutionDataModel

copyAsMarkerCollectionArray, detach, getNumItems, getResult, getResults, iterator

Methods inherited from class com.pacbio.secondary.vis.data.base.BaseDataModel

addChangeListener, fireChangeEvent, getDataType, getDataTypeAsString, getMarkersForContig, getNumContigs, hasData, isMarkerType, isModificationsType, isReadsType, isSummaryType, isVariantsType, removeChangeListener, setTypeAndNumContigs

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface com.pacbio.secondary.vis.gui.evt.IChangeNotifier

addChangeListener, removeChangeListener

Constructor Detail

VariableResolutionMemoryDataModel

public VariableResolutionMemoryDataModel()

Method Detail

get

public VariableValuesDataRecord get(int j)

getFilePath

public java.util.LinkedList<java.lang.String> getFilePath()

Returns:

Returns the path of the loaded files.

size

public int size()

Description copied from interface: IVariableResolutionDataModelServer

Returns the overall number of markers.

Returns:

getRecords

public java.util.ArrayList<VariableValuesDataRecord> getRecords()

setRecords

public void setRecords(java.util.ArrayList<VariableValuesDataRecord> records)

setFileName

public void setFileName(java.lang.String info)

toCollection

public java.util.Collection<VariableValuesDataRecord> toCollection()

getFileHeader

public java.util.LinkedList<java.lang.String> getFileHeader()

Returns:

Returns the header of the loaded files.

getDataInfo

public java.util.LinkedList<java.lang.String> getDataInfo()

Returns:

Returns summary info of loaded data

getMinMaxValues

public VariableResolutionDataSetValues getMinMaxValues()