Uses of Class
com.pacbio.secondary.vis.data.variableresolution.model.VariableResolutionDataSet

Packages that use VariableResolutionDataSet

Package	Description
com.pacbio.secondary.vis.data.session	Client side user session data models
com.pacbio.secondary.vis.data.table.model	Genomic tables data models
com.pacbio.secondary.vis.gui.app	Main application classes, support local, remote, webstart based deployment
com.pacbio.secondary.vis.gui.draw.views	Genomic views
com.pacbio.secondary.vis.gui.frame	Client application main frame
com.pacbio.secondary.vis.io.update	Support for interactive data updates after user preferences changes

Uses of VariableResolutionDataSet in com.pacbio.secondary.vis.data.session

Fields in com.pacbio.secondary.vis.data.session with type parameters of type VariableResolutionDataSet

Modifier and Type	Field and Description
protected java.util.Vector<VariableResolutionDataSet>	DataStorageBase.slots_datasets

Methods in com.pacbio.secondary.vis.data.session that return types with arguments of type VariableResolutionDataSet

Modifier and Type	Method and Description
java.util.Vector<VariableResolutionDataSet>	DataStorageBase.getSlotsDatasets()

Method parameters in com.pacbio.secondary.vis.data.session with type arguments of type VariableResolutionDataSet

Modifier and Type	Method and Description
void	DataStorageBase.setSlotsDatasets(java.util.Vector<VariableResolutionDataSet> slots)

Uses of VariableResolutionDataSet in com.pacbio.secondary.vis.data.table.model

Methods in com.pacbio.secondary.vis.data.table.model that return types with arguments of type VariableResolutionDataSet

Modifier and Type	Method and Description
protected java.util.Vector<VariableResolutionDataSet>	TableModelAnnotations.getSlotsDatasets()

Uses of VariableResolutionDataSet in com.pacbio.secondary.vis.gui.app

Methods in com.pacbio.secondary.vis.gui.app that return types with arguments of type VariableResolutionDataSet

Modifier and Type	Method and Description
java.util.Vector<VariableResolutionDataSet>	VioletAppBase.getSlots()

Uses of VariableResolutionDataSet in com.pacbio.secondary.vis.gui.draw.views

Methods in com.pacbio.secondary.vis.gui.draw.views that return types with arguments of type VariableResolutionDataSet

Modifier and Type	Method and Description
java.util.Vector<VariableResolutionDataSet>	GenomicViewData.getSlots()

Methods in com.pacbio.secondary.vis.gui.draw.views with parameters of type VariableResolutionDataSet

Modifier and Type	Method and Description
protected void	GenomicViewHorizontal.drawFilteredTrack(java.awt.Graphics g, java.util.List<Marker> list, MarkerCollection track, java.util.ArrayList<java.lang.Integer> track_indexes, VariableResolutionDataSet slot)
protected void	GenomicViewHorizontal.drawMarkersLegend(java.awt.Graphics g, VariableResolutionDataSet slot, java.awt.Rectangle rect)
protected void	GenomicViewHorizontal.drawModificationsLegend(java.awt.Graphics2D g, VariableResolutionDataSet slot, java.awt.Rectangle rect) draw legend for motifs/mods track
protected void	GenomicViewHorizontal.drawSummaryLegends(java.awt.Graphics g, VariableResolutionDataSet slot, int summary_index, java.awt.Rectangle rect, int char_height) draws summary legends
protected void	GenomicViewHorizontal.drawVariantsLegend(java.awt.Graphics2D g, VariableResolutionDataSet slot, java.awt.Rectangle rect)
protected int	ViewLayoutInfo.getDesiredTrackHeight(VariableResolutionDataSet slot, int track_index, int track_height, boolean isDetails)
double	GenomicViewHorizontal.getMaxCoverageInInterval(VariableResolutionDataSet slot)

Method parameters in com.pacbio.secondary.vis.gui.draw.views with type arguments of type VariableResolutionDataSet

Modifier and Type	Method and Description
protected int	ViewLayoutInfo.init(java.util.Vector<VariableResolutionDataSet> slots, int track_height)
protected int	ViewLayoutInfo.init(java.util.Vector<VariableResolutionDataSet> slots, java.awt.Rectangle bottomMarkerBounds, int track_height, boolean isDetails)

Uses of VariableResolutionDataSet in com.pacbio.secondary.vis.gui.frame

Methods in com.pacbio.secondary.vis.gui.frame that return types with arguments of type VariableResolutionDataSet

Modifier and Type	Method and Description
java.util.Vector<VariableResolutionDataSet>	VioletFrameBase.getSlots()

Uses of VariableResolutionDataSet in com.pacbio.secondary.vis.io.update

Methods in com.pacbio.secondary.vis.io.update with parameters of type VariableResolutionDataSet

Modifier and Type	Method and Description
protected void	UpdateModificationsDataHelper.ThreadHelper.updateDataSet(VariableResolutionDataSet dataset)
protected void	UpdateVariantsDataHelper.ThreadHelper.updateDataSet(VariableResolutionDataSet dataset)