com.pacbio.secondary.vis.data.xmlinfo

Class ReferenceInfo

java.lang.Object

com.pacbio.secondary.vis.data.xmlinfo.ReferenceInfo

public class ReferenceInfo
extends java.lang.Object

Author:

mmilletti

Constructor Summary

Constructors

Constructor and Description
ReferenceInfo(VisServiceStub.WsReferenceInfo res)
ReferenceInfo(WsReferenceInfo res)

Method Summary

Methods

Modifier and Type	Method and Description
protected void	createUnknownContigInfo(int n_contigs)
int	getAbsMaxContigLength()
java.lang.String	getContigLabelFromIndex(int index, boolean bShort)
ContigInfo[]	getContigs_info_array()
java.lang.String	getIdeogramFile()
java.lang.String	getName()
int	getNumContigs()
java.lang.String	getPath()
java.lang.String	getRefId()
java.lang.String	getSequenceFile()
java.lang.String	getSequenceIndexFile()
boolean	isDeNovo()
void	setAbsMaxContigLength(int max_contig_length)
void	setContigs_info_array(ContigInfo[] contigsInfoArray)
void	setIdeogramFile(java.lang.String ideogram_file)
void	setName(java.lang.String name)
void	setNumContigs(int num_contigs)
void	setPath(java.lang.String path)
void	setRefId(java.lang.String name)
void	setSequenceFile(java.lang.String sequence_file)
void	setSequenceIndexFile(java.lang.String sequence_index_file)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReferenceInfo

public ReferenceInfo(VisServiceStub.WsReferenceInfo res)

ReferenceInfo

public ReferenceInfo(WsReferenceInfo res)

Method Detail

createUnknownContigInfo

protected void createUnknownContigInfo(int n_contigs)

getContigLabelFromIndex

public java.lang.String getContigLabelFromIndex(int index,
                                       boolean bShort)

getContigs_info_array

public ContigInfo[] getContigs_info_array()

setContigs_info_array

public void setContigs_info_array(ContigInfo[] contigsInfoArray)

setNumContigs

public void setNumContigs(int num_contigs)

getNumContigs

public int getNumContigs()

setPath

public void setPath(java.lang.String path)

getPath

public java.lang.String getPath()

setName

public void setName(java.lang.String name)

getName

public java.lang.String getName()

setRefId

public void setRefId(java.lang.String name)

getRefId

public java.lang.String getRefId()

setIdeogramFile

public void setIdeogramFile(java.lang.String ideogram_file)

getIdeogramFile

public java.lang.String getIdeogramFile()

setSequenceFile

public void setSequenceFile(java.lang.String sequence_file)

getSequenceFile

public java.lang.String getSequenceFile()

setSequenceIndexFile

public void setSequenceIndexFile(java.lang.String sequence_index_file)

getSequenceIndexFile

public java.lang.String getSequenceIndexFile()

setAbsMaxContigLength

public void setAbsMaxContigLength(int max_contig_length)

getAbsMaxContigLength

public int getAbsMaxContigLength()

isDeNovo

public boolean isDeNovo()