Uses of Class
com.pacbio.secondary.vis.data.xmlinfo.ReferenceInfo

Packages that use ReferenceInfo

Package	Description
com.pacbio.secondary.vis.data.db	Ideogram and genes collections support
com.pacbio.secondary.vis.data.session	Client side user session data models
com.pacbio.secondary.vis.data.xmlinfo	XML metadata files data models
com.pacbio.secondary.vis.gui.app	Main application classes, support local, remote, webstart based deployment
com.pacbio.secondary.vis.gui.draw.views	Genomic views
com.pacbio.secondary.vis.gui.frame	Client application main frame
com.pacbio.secondary.vis.svc.vis.client	VisService client support

Uses of ReferenceInfo in com.pacbio.secondary.vis.data.db

Methods in com.pacbio.secondary.vis.data.db with parameters of type ReferenceInfo

Modifier and Type	Method and Description
void	IdeogramDB.generateDefault(ReferenceInfo ref_info)
boolean	GeneDB.read(ReferenceInfo reference, java.io.Reader reader, java.lang.String file_name, IProgressNotifier notifier) Loads a gene database from a stream.

Uses of ReferenceInfo in com.pacbio.secondary.vis.data.session

Fields in com.pacbio.secondary.vis.data.session declared as ReferenceInfo

Modifier and Type	Field and Description
protected ReferenceInfo	DataStorageBase.reference_info

Methods in com.pacbio.secondary.vis.data.session that return ReferenceInfo

Modifier and Type	Method and Description
ReferenceInfo	DataStorageBase.getReferenceInfo()

Uses of ReferenceInfo in com.pacbio.secondary.vis.data.xmlinfo

Methods in com.pacbio.secondary.vis.data.xmlinfo that return ReferenceInfo

Modifier and Type	Method and Description
ReferenceInfo	JobMetadataInfo.getReferenceInfo()

Uses of ReferenceInfo in com.pacbio.secondary.vis.gui.app

Methods in com.pacbio.secondary.vis.gui.app that return ReferenceInfo

Modifier and Type	Method and Description
ReferenceInfo	VioletAppBase.getReferenceInfo()

Uses of ReferenceInfo in com.pacbio.secondary.vis.gui.draw.views

Methods in com.pacbio.secondary.vis.gui.draw.views that return ReferenceInfo

Modifier and Type	Method and Description
ReferenceInfo	GenomicViewBase.getReferenceInfo()

Uses of ReferenceInfo in com.pacbio.secondary.vis.gui.frame

Methods in com.pacbio.secondary.vis.gui.frame that return ReferenceInfo

Modifier and Type	Method and Description
ReferenceInfo	VioletFrameBase.getReferenceInfo()

Uses of ReferenceInfo in com.pacbio.secondary.vis.svc.vis.client

Methods in com.pacbio.secondary.vis.svc.vis.client that return ReferenceInfo

Modifier and Type	Method and Description
ReferenceInfo	VisServiceWrapper.doSyncGetReferenceInfoFromURL(java.lang.String url)