| com.pacbio.secondary.vis.common.utils |
Client/Server common utilities
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| com.pacbio.secondary.vis.common.utils.constants |
Client/Server common constants
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| com.pacbio.secondary.vis.data.db |
Ideogram and genes collections support
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| com.pacbio.secondary.vis.data.filesystem |
Abstraction layer for local and remote filesystem access
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| com.pacbio.secondary.vis.data.session |
Client side user session data models
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| com.pacbio.secondary.vis.data.session.timer |
Timer and timer task for restoring user session
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| com.pacbio.secondary.vis.data.table.model |
Genomic tables data models
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| com.pacbio.secondary.vis.data.variableresolution.model.gff |
GFF3 variable resolution data model
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| com.pacbio.secondary.vis.gui.app |
Main application classes, support local, remote, webstart based deployment
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| com.pacbio.secondary.vis.gui.desktop |
Support for dockable windows based desktop
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| com.pacbio.secondary.vis.gui.dialogs |
Application dialogs
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| com.pacbio.secondary.vis.gui.draw.utils |
Drawing utilities
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| com.pacbio.secondary.vis.gui.draw.views |
Genomic views
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| com.pacbio.secondary.vis.gui.frame |
Client application main frame
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| com.pacbio.secondary.vis.gui.panels |
Specialized dockable genomic panels
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| com.pacbio.secondary.vis.gui.panels.base |
Generic dockable genomic panels
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| com.pacbio.secondary.vis.io.epipro |
Parser for epipro/unmapped reads data
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| com.pacbio.secondary.vis.io.export |
GFF3 export support
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| com.pacbio.secondary.vis.io.gff |
GFF3 reader support
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| com.pacbio.secondary.vis.io.gff.modifications |
GFF3 Base Modifications Info support
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| com.pacbio.secondary.vis.io.gff.summary |
GFF3 Summary Info support
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| com.pacbio.secondary.vis.io.gff.variants |
GFF3 variants support
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| com.pacbio.secondary.vis.io.importer |
Local and remote data files import support
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| com.pacbio.secondary.vis.io.motifs |
Parser for Motifs files
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| com.pacbio.secondary.vis.io.ucsc.gtf.reader |
Parser for UCSC generated gtf (gene transfer format) files
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| com.pacbio.secondary.vis.io.update |
Support for interactive data updates after user preferences changes
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| com.pacbio.secondary.vis.io.vcf |
Parser for VCF (variants) files
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| com.pacbio.secondary.vis.smrtcloud |
SMRT Cloud deployment support
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| com.pacbio.secondary.vis.svc.hdf.client |
HDFService client support
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| com.pacbio.secondary.vis.svc.vis.client |
VisService client support
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