com.pacbio.secondary.vis.gui.draw.utils

Class GraphUtil

java.lang.Object

com.pacbio.secondary.vis.gui.draw.utils.GraphUtil

public class GraphUtil
extends java.lang.Object

Helper class for specialized graphs drawing

Constructor Summary

Constructors

Constructor and Description
GraphUtil()

Method Summary

Methods

Modifier and Type	Method and Description
static void	drawAlleleShape(java.awt.Graphics2D g, Marker marker, int x, int y, int w, int h) Draw a variant using two colors scheme from allele results
static void	drawBaseMod(java.awt.Graphics g, int x, int y, int width, int height, int type, int strand, int conf) uses triangles at top/bottom for strand
static void	drawBaseModShape(java.awt.Graphics g, int x, int y, int width, int height, int strand)
static void	drawBaseModShapeDna(java.awt.Graphics g, int x, int y, int width, int height, int strand, int shape)
static void	drawBaseModUnmodified(java.awt.Graphics g, int x, int y, int width, int height, int strand)
static void	drawCircularText(java.awt.Graphics2D g, java.lang.String text, java.awt.Point center, double radius, double a1, double af) Draw text on a circular curve, one character at a time
static void	drawFilledRoundRectangle(java.awt.Graphics g, int x1, int y1, int x2, int y2, int rtl, int rtr, int rbl, int rbr)
static void	drawFilledStrandedRect(java.awt.Graphics g, int x, int y, int width, int height, int nStrand)
protected static void	drawMinSizeMarker(java.awt.Graphics g, int x, int y, int correction, int height, int strand)
static void	drawOutlinedStrandedRect(java.awt.Graphics g, int x, int y, int width, int height, int nStrand)
static void	drawRoundRectangle(java.awt.Graphics g, int x1, int y1, int x2, int y2, int rtl, int rtr, int rbl, int rbr, boolean top, boolean right, boolean bottom, boolean left)
static void	drawVariantShape(java.awt.Graphics2D g, int type, int x1, int y, int width, int font_width, int dy)
static void	eraseStrandedReadEdge(java.awt.Graphics g, int x, int y, int width, int height, int nStrand)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GraphUtil

public GraphUtil()

Method Detail

drawCircularText

public static void drawCircularText(java.awt.Graphics2D g,
                    java.lang.String text,
                    java.awt.Point center,
                    double radius,
                    double a1,
                    double af)

Draw text on a circular curve, one character at a time

Parameters:

g - a Graphics2D

text - the string to draw

center - the center point of the circle

radius - the radius of the circle

a1 - the beginning angle on the circle to start, in radians

af - the angle advance factor (usually 1.0)

eraseStrandedReadEdge

public static void eraseStrandedReadEdge(java.awt.Graphics g,
                         int x,
                         int y,
                         int width,
                         int height,
                         int nStrand)

drawFilledStrandedRect

public static void drawFilledStrandedRect(java.awt.Graphics g,
                          int x,
                          int y,
                          int width,
                          int height,
                          int nStrand)

drawOutlinedStrandedRect

public static void drawOutlinedStrandedRect(java.awt.Graphics g,
                            int x,
                            int y,
                            int width,
                            int height,
                            int nStrand)

drawRoundRectangle

public static void drawRoundRectangle(java.awt.Graphics g,
                      int x1,
                      int y1,
                      int x2,
                      int y2,
                      int rtl,
                      int rtr,
                      int rbl,
                      int rbr,
                      boolean top,
                      boolean right,
                      boolean bottom,
                      boolean left)

Parameters:

g -

x1 -

y1 -

x2 -

y2 -

rtl -

rtr -

rbl -

rbr -

top -

right -

bottom -

left -

drawFilledRoundRectangle

public static void drawFilledRoundRectangle(java.awt.Graphics g,
                            int x1,
                            int y1,
                            int x2,
                            int y2,
                            int rtl,
                            int rtr,
                            int rbl,
                            int rbr)

Parameters:

g -

x1 -

y1 -

x2 -

y2 -

rtl -

rtr -

rbl -

rbr -

drawBaseMod

public static void drawBaseMod(java.awt.Graphics g,
               int x,
               int y,
               int width,
               int height,
               int type,
               int strand,
               int conf)

uses triangles at top/bottom for strand

Parameters:

g -

x -

y -

width -

height -

type -

strand -

conf -

drawBaseModUnmodified

public static void drawBaseModUnmodified(java.awt.Graphics g,
                         int x,
                         int y,
                         int width,
                         int height,
                         int strand)

drawBaseModShape

public static void drawBaseModShape(java.awt.Graphics g,
                    int x,
                    int y,
                    int width,
                    int height,
                    int strand)

drawBaseModShapeDna

public static void drawBaseModShapeDna(java.awt.Graphics g,
                       int x,
                       int y,
                       int width,
                       int height,
                       int strand,
                       int shape)

drawMinSizeMarker

protected static void drawMinSizeMarker(java.awt.Graphics g,
                     int x,
                     int y,
                     int correction,
                     int height,
                     int strand)

Parameters:

g -

x -

y -

correction -

height -

strand -

drawVariantShape

public static void drawVariantShape(java.awt.Graphics2D g,
                    int type,
                    int x1,
                    int y,
                    int width,
                    int font_width,
                    int dy)

Parameters:

g -

type -

x1 -

y -

width -

font_width -

dy -

drawAlleleShape

public static void drawAlleleShape(java.awt.Graphics2D g,
                   Marker marker,
                   int x,
                   int y,
                   int w,
                   int h)

Draw a variant using two colors scheme from allele results

Parameters:

g -

marker -

x -

y -

w -

h -