Uses of Class
com.pacbio.secondary.vis.gui.draw.views.GenomicViewEvents

Packages that use GenomicViewEvents

Package	Description
com.pacbio.secondary.vis.common.utils	Client/Server common utilities
com.pacbio.secondary.vis.data.table.model	Genomic tables data models
com.pacbio.secondary.vis.gui.draw.utils	Drawing utilities
com.pacbio.secondary.vis.gui.draw.views	Genomic views
com.pacbio.secondary.vis.gui.frame	Client application main frame
com.pacbio.secondary.vis.gui.panels	Specialized dockable genomic panels

Uses of GenomicViewEvents in com.pacbio.secondary.vis.common.utils

Methods in com.pacbio.secondary.vis.common.utils with parameters of type GenomicViewEvents

Modifier and Type	Method and Description
static java.lang.String	ProgramUtils.getDataExportPostFix(GenomicViewEvents view)

Uses of GenomicViewEvents in com.pacbio.secondary.vis.data.table.model

Fields in com.pacbio.secondary.vis.data.table.model declared as GenomicViewEvents

Modifier and Type	Field and Description
protected GenomicViewEvents	TableModelGenomicInterval.current_view
protected GenomicViewEvents	TableModelTrack.current_view

Methods in com.pacbio.secondary.vis.data.table.model that return GenomicViewEvents

Modifier and Type	Method and Description
GenomicViewEvents	TableModelBase.getView() Override to return the view currently associated with this table
GenomicViewEvents	TableModelGenomicInterval.getView()
GenomicViewEvents	TableModelTrack.getView()

Methods in com.pacbio.secondary.vis.data.table.model with parameters of type GenomicViewEvents

Modifier and Type	Method and Description
void	TableModelTrack.setGenomicTrack(GenomicViewEvents view, int track_index)
void	TableModelGenomicInterval.setGenomicView(GenomicViewEvents view)

Uses of GenomicViewEvents in com.pacbio.secondary.vis.gui.draw.utils

Methods in com.pacbio.secondary.vis.gui.draw.utils with parameters of type GenomicViewEvents

Modifier and Type	Method and Description
protected static void	InfoBuilder.addGeneHtmlTooltip(GenomicViewEvents source, java.lang.StringBuffer buf, Marker gene, java.text.NumberFormat nf, boolean addImage) gene tooltip
protected static void	InfoBuilder.addGenesTrackInfo(GenomicViewEvents source, java.lang.StringBuffer buf, java.text.NumberFormat nf)
protected static void	InfoBuilder.addMarkerCollectionHtmlTooltip(GenomicViewEvents source, java.lang.StringBuffer html, MarkerCollection track, java.text.NumberFormat nf, boolean b) track tooltip
protected static void	InfoBuilder.addMarkerHtmlTooltip(GenomicViewEvents source, java.lang.StringBuffer buf, Marker marker, MarkerCollection track, java.text.NumberFormat nf, boolean addImage) marker tooltip
protected static void	InfoBuilder.addReadsInfo(GenomicViewEvents source, java.lang.StringBuffer buf, java.text.NumberFormat nf)
protected static void	InfoBuilder.addReferenceKinetogramInfo(GenomicViewEvents view, java.lang.StringBuffer buf, java.text.NumberFormat nf)
protected static void	InfoBuilder.appendImageInfo(GenomicViewEvents source, java.lang.StringBuffer buf, java.lang.String imagename, int img_width, int img_height, java.lang.String stype)
static void	InfoBuilder.getHtmlToolTipForTable(GenomicViewEvents source, Marker marker, MarkerCollection track, java.lang.StringBuffer buf) gets tooltip for table view
static void	InfoBuilder.getHtmlToolTipText(GenomicViewEvents source, java.lang.StringBuffer buf, java.awt.Point mouse_pos)
static void	InfoBuilder.getIntersectedMarkers(java.lang.StringBuffer buf, Marker selectedMarker, Marker selectedGene, GenomicViewEvents view)
static java.lang.String	InfoBuilder.getMarkerInfo(MarkerCollection track, Marker marker, GenomicViewEvents source)
static void	InfoBuilder.getSelectionInfoChromosomes(GenomicViewEvents source, java.lang.StringBuffer buf)
static void	InfoBuilder.getSelectionInfoMarkers(GenomicViewEvents source, java.lang.StringBuffer buf)
static void	InfoBuilder.getSelectionInfoReads(GenomicViewEvents source, java.lang.StringBuffer buf)
static void	InfoBuilder.getSelectionInfoTracks(GenomicViewEvents source, java.lang.StringBuffer buf)
protected static boolean	InfoBuilder.haveBaseModsSummary(GenomicViewEvents source)
protected static boolean	InfoBuilder.haveVariantsSummary(GenomicViewEvents source)

Uses of GenomicViewEvents in com.pacbio.secondary.vis.gui.draw.views

Subclasses of GenomicViewEvents in com.pacbio.secondary.vis.gui.draw.views

Modifier and Type	Class and Description
class	GenomicViewCircular
class	GenomicViewDetails GenomicViewDetailsData
class	GenomicViewDetailsData
class	GenomicViewDetailsDraw
class	GenomicViewHorizontal
class	GenomicViewInspect
class	GenomicViewRegion
class	GenomicViewSingleContig
class	GenomicViewVertical

Methods in com.pacbio.secondary.vis.gui.draw.views that return GenomicViewEvents

Modifier and Type	Method and Description
protected GenomicViewEvents	GenomicViewEvents.getActiveViewForKeyEvents()

Uses of GenomicViewEvents in com.pacbio.secondary.vis.gui.frame

Methods in com.pacbio.secondary.vis.gui.frame that return GenomicViewEvents

Modifier and Type	Method and Description
protected GenomicViewEvents	VioletFrameChanges.getActiveGenomicView()
protected GenomicViewEvents	VioletFrameActions.getActiveView(boolean toolbar)
GenomicViewEvents	VioletFrameBase.getRegionView()
GenomicViewEvents[]	VioletFrameBase.getSingleContigsViews()

Methods in com.pacbio.secondary.vis.gui.frame with parameters of type GenomicViewEvents

Modifier and Type	Method and Description
void	VioletFrameChanges.updateSelectionPanel(GenomicViewEvents source)

Uses of GenomicViewEvents in com.pacbio.secondary.vis.gui.panels

Fields in com.pacbio.secondary.vis.gui.panels declared as GenomicViewEvents

Modifier and Type	Field and Description
protected GenomicViewEvents	SelectionInfoPanel.lastSource

Methods in com.pacbio.secondary.vis.gui.panels with parameters of type GenomicViewEvents

Modifier and Type	Method and Description
boolean	GenomicTablePanel.showInterval(GenomicViewEvents view) Shows all tracks of input view
protected boolean	GenomicTablePanel.showTrack(GenomicViewEvents view) Shows selected track of input view
void	SelectionInfoPanel.updatePanel(GenomicViewEvents source)
protected void	GenomicTablePanel.updateTitle(GenomicViewEvents view)
protected void	GenomicTablePanel.updateTitle(GenomicViewEvents view, int track_index)