Package | Description |
---|---|
com.pacbio.secondary.vis.common.collection |
Specialized collection classes
|
com.pacbio.secondary.vis.data.variableresolution.model |
Variable resolution data models
|
com.pacbio.secondary.vis.data.variableresolution.model.gff |
GFF3 variable resolution data model
|
com.pacbio.secondary.vis.io.gff |
GFF3 reader support
|
com.pacbio.secondary.vis.io.gff.modifications |
GFF3 Base Modifications Info support
|
com.pacbio.secondary.vis.io.gff.summary |
GFF3 Summary Info support
|
com.pacbio.secondary.vis.io.gff.variants |
GFF3 variants support
|
com.pacbio.secondary.vis.io.ucsc.gtf.reader |
Parser for UCSC generated gtf (gene transfer format) files
|
com.pacbio.secondary.vis.io.vcf |
Parser for VCF (variants) files
|
Modifier and Type | Class and Description |
---|---|
class |
ChangeNotifier |
Modifier and Type | Interface and Description |
---|---|
interface |
IVariableResolutionDataModelServer
serves filtered generic records data.
|
Modifier and Type | Class and Description |
---|---|
class |
VariableResolutionDataModel |
class |
VariableResolutionDataModelsMerger
Merges an array of VariableResolutionDataModelsMerger
|
class |
VariableResolutionDataSet
A DataSlot encapsulates one or more GenericDataModel datasets with all configurations.
|
class |
VariableResolutionMemoryDataModel |
Modifier and Type | Class and Description |
---|---|
class |
GFFDataModel |
Modifier and Type | Class and Description |
---|---|
class |
GFF3Reader |
Modifier and Type | Class and Description |
---|---|
class |
GFFModificationsReader |
Modifier and Type | Class and Description |
---|---|
class |
GFFSummaryReader |
Modifier and Type | Class and Description |
---|---|
class |
GFFVariantsReader |
Modifier and Type | Class and Description |
---|---|
class |
UCSCGTFReader |
Modifier and Type | Class and Description |
---|---|
class |
VCFMultiSampleReader |
class |
VCFReader |
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