com.pacbio.secondary.vis.gui.frame

Class VioletFrameChanges

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Frame

javax.swing.JFrame

com.pacbio.secondary.vis.gui.frame.VioletFrameBase

com.pacbio.secondary.vis.gui.frame.VioletFrameChanges

All Implemented Interfaces:

java.awt.event.ComponentListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ChangeListener, javax.swing.event.TableModelListener, javax.swing.RootPaneContainer, javax.swing.WindowConstants, DockableSelectionListener, DockableStateChangeListener

Direct Known Subclasses:

VioletFrameIO

public class VioletFrameChanges
extends VioletFrameBase
implements javax.swing.event.TableModelListener, java.awt.event.ComponentListener, javax.swing.event.ChangeListener, DockableStateChangeListener, DockableSelectionListener

Author:

mmilletti

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	VioletFrameChanges.setOptimumZoomFactorsThreaded

Nested classes/interfaces inherited from class javax.swing.JFrame

javax.swing.JFrame.AccessibleJFrame

Nested classes/interfaces inherited from class java.awt.Frame

java.awt.Frame.AccessibleAWTFrame

Nested classes/interfaces inherited from class java.awt.Window

java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field and Description
protected Dockable	last_selected_dockable_view

Fields inherited from class com.pacbio.secondary.vis.gui.frame.VioletFrameBase

bFitRegionViewToWindowHeight, bFitToWindow, browser_panel, chromosomes_panel, chromosomes_scroller, chromosomes_views, circular_scroller, circular_view, currentMainFrameContig, default_workspace_layout, denovo_table_panel, details_scroller, details_view, docking_desktop, genomic_table_panel, heartbeat_timer, main_app, pageFormat, popmenu, printerJob, region_scroller, region_view, selection_panel

Fields inherited from class javax.swing.JFrame

accessibleContext, EXIT_ON_CLOSE, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
VioletFrameChanges(java.lang.String str)

Method Summary

Methods

Modifier and Type	Method and Description
void	componentHidden(java.awt.event.ComponentEvent e)
void	componentMoved(java.awt.event.ComponentEvent e)
void	componentResized(java.awt.event.ComponentEvent event) Called when window is resized Also called from docking splitters
void	componentShown(java.awt.event.ComponentEvent e)
void	dockableStateChanged(DockableStateChangeEvent event) dockable windows docked/hidden or tabbed
protected GenomicViewEvents	getActiveGenomicView()
void	invalidateAndRepaintAllViews()
void	selectionChanged(DockableSelectionEvent event) This method is invoked when a new dockable is selected.
void	setOptimumZoomFactors()
void	stateChanged(javax.swing.event.ChangeEvent e) If a selection changed in one of the views
void	tableChanged(javax.swing.event.TableModelEvent e)
protected void	updateCircularView()
void	updateDeNovoTablePanel()
void	updateDetailsView(boolean force_rescale, boolean force_redraw)
void	updateRegionView(boolean force_rescale, boolean force_redraw)
void	updateRegionViewDetailsRange()
void	updateSelectionPanel(GenomicViewEvents source)
void	updateTablePanel()

Methods inherited from class com.pacbio.secondary.vis.gui.frame.VioletFrameBase

clearAllSlots, clearMarkersFromAllViews, getCircularScrollPanel, getCurrentMainFrameContig, getDataStorage, getDefaultWorkspaceLayout, getDeNovoTablePanel, getDetailsPanel, getDetailsView, getDockingDesktop, getGeneDB, getGenomePanel, getGenomeScrollPanel, getGenomicTablePanel, getIdeogramDB, getNumChromosomes, getPageFormat, getPrinterJob, getReferenceInfo, getRegionPanel, getRegionView, getSelectedSingleContigView, getSelectionPanel, getShowLabels, getShowMarkerLabels, getShowMarkers, getSingleContigsViews, getSlots, getVioletApp, getWebBrowserPanel, initLocals, normalCursor, resetVisibleGenomicRangeOfViews, saveDefaultLayout, setCurrentMainFrameContig, setDetailsViewMagnification, setFitRegionViewToWindowHeight, setMultiChromosomesViewMagnification, setPageFormat, setRegionViewMagnification, setShowGenes, setShowLabels, setShowMarkerLabels, setShowMarkers, updateWholeGenomeView, waitCursor

Methods inherited from class javax.swing.JFrame

addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Frame

addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Detail

last_selected_dockable_view

protected Dockable last_selected_dockable_view

Constructor Detail

VioletFrameChanges

public VioletFrameChanges(java.lang.String str)

Method Detail

tableChanged

public void tableChanged(javax.swing.event.TableModelEvent e)

Specified by:

tableChanged in interface javax.swing.event.TableModelListener

componentResized

public void componentResized(java.awt.event.ComponentEvent event)

Called when window is resized Also called from docking splitters

Specified by:

componentResized in interface java.awt.event.ComponentListener

componentMoved

public void componentMoved(java.awt.event.ComponentEvent e)

Specified by:

componentMoved in interface java.awt.event.ComponentListener

componentShown

public void componentShown(java.awt.event.ComponentEvent e)

Specified by:

componentShown in interface java.awt.event.ComponentListener

componentHidden

public void componentHidden(java.awt.event.ComponentEvent e)

Specified by:

componentHidden in interface java.awt.event.ComponentListener

stateChanged

public void stateChanged(javax.swing.event.ChangeEvent e)

If a selection changed in one of the views

Specified by:

stateChanged in interface javax.swing.event.ChangeListener

dockableStateChanged

public void dockableStateChanged(DockableStateChangeEvent event)

dockable windows docked/hidden or tabbed

Specified by:

dockableStateChanged in interface DockableStateChangeListener

selectionChanged

public void selectionChanged(DockableSelectionEvent event)

Description copied from interface: DockableSelectionListener

This method is invoked when a new dockable is selected.

Specified by:

selectionChanged in interface DockableSelectionListener

updateRegionView

public void updateRegionView(boolean force_rescale,
                    boolean force_redraw)

updateDetailsView

public void updateDetailsView(boolean force_rescale,
                     boolean force_redraw)

updateCircularView

protected void updateCircularView()

updateRegionViewDetailsRange

public void updateRegionViewDetailsRange()

updateSelectionPanel

public void updateSelectionPanel(GenomicViewEvents source)

updateDeNovoTablePanel

public void updateDeNovoTablePanel()

updateTablePanel

public void updateTablePanel()

setOptimumZoomFactors

public void setOptimumZoomFactors()

getActiveGenomicView

protected GenomicViewEvents getActiveGenomicView()

invalidateAndRepaintAllViews

public void invalidateAndRepaintAllViews()