com.pacbio.secondary.vis.gui.panels

Class GenomicTablePanel

java.lang.Object

java.awt.Component

java.awt.Container

javax.swing.JComponent

javax.swing.JPanel

com.pacbio.secondary.vis.gui.panels.base.DockablePaneBase

com.pacbio.secondary.vis.gui.panels.base.TablePanelBase

com.pacbio.secondary.vis.gui.panels.GenomicTablePanel

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ChangeListener, Dockable

public class GenomicTablePanel
extends TablePanelBase
implements javax.swing.event.ChangeListener, java.awt.event.ActionListener

Generic table panel for all experiments

Author:

mmilletti

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
protected class	GenomicTablePanel.GenomicTablePanelKeyListener
protected class	GenomicTablePanel.GenomicTablePanelMouseListener

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field and Description
protected GenomicTableBase	data_table
protected TableModelAnnotations	model_annotations
protected TableModelGenomicInterval	model_interval
protected TableModelTrack	model_track
protected javax.swing.JPopupMenu	popupmenu

Fields inherited from class com.pacbio.secondary.vis.gui.panels.base.TablePanelBase

enable_filter, filter_text_field, filter_view_btn, main_app, panel_status_text, sorter

Fields inherited from class com.pacbio.secondary.vis.gui.panels.base.DockablePaneBase

key

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
GenomicTablePanel(VioletApp main_app, java.lang.String dockkey, java.lang.String name, java.lang.String tooltip, boolean enable_filter)

Method Summary

Methods

Modifier and Type	Method and Description
void	actionPerformed(java.awt.event.ActionEvent event)
protected void	createPopupMenu() create table browser popup menu
GenomicTableBase	getTable() returns table
protected void	setSorter()
void	setTableView(java.lang.String mode)
boolean	showAllAnnotations() Shows all tracks of input view
boolean	showInterval(GenomicViewEvents view) Shows all tracks of input view
protected boolean	showTrack(GenomicViewEvents view) Shows selected track of input view
void	stateChanged(javax.swing.event.ChangeEvent e)
protected void	updateAutoResizeMode()
protected void	updatePopupMenuStatus(java.awt.Component[] menu) Updates selection state of popup menu
void	updateTableMenus() Called by main frame when users change table options using main menu
void	updateTablePanel(boolean isDetails) called by listener frame in event thread...
protected void	updateTitle()
protected void	updateTitle(GenomicViewEvents view)
protected void	updateTitle(GenomicViewEvents view, int track_index)
void	viewEvent()

Methods inherited from class com.pacbio.secondary.vis.gui.panels.base.TablePanelBase

addFilterItemsToLayout, addSelectionListener, createFilter, getQueryCriteria, getTableModel, InitDockable, rowHasBeenSelected, updateColumnWidths, updateFilter, updatePanelStatus, updateQueryCriteria, updateViews

Methods inherited from class com.pacbio.secondary.vis.gui.panels.base.DockablePaneBase

getComponent, getDockKey

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

data_table

protected GenomicTableBase data_table

model_annotations

protected TableModelAnnotations model_annotations

model_interval

protected TableModelGenomicInterval model_interval

model_track

protected TableModelTrack model_track

popupmenu

protected javax.swing.JPopupMenu popupmenu

Constructor Detail

GenomicTablePanel

public GenomicTablePanel(VioletApp main_app,
                 java.lang.String dockkey,
                 java.lang.String name,
                 java.lang.String tooltip,
                 boolean enable_filter)

Parameters:

main_app -

dockey -

Method Detail

updateAutoResizeMode

protected void updateAutoResizeMode()

updateTablePanel

public void updateTablePanel(boolean isDetails)

called by listener frame in event thread... If isDetails is true, only update if details is currently selected

showTrack

protected boolean showTrack(GenomicViewEvents view)

Shows selected track of input view

Parameters:

view -

Returns:

showInterval

public boolean showInterval(GenomicViewEvents view)

Shows all tracks of input view

Parameters:

view -

Returns:

showAllAnnotations

public boolean showAllAnnotations()

Shows all tracks of input view

Parameters:

view -

Returns:

setSorter

protected void setSorter()

getTable

public GenomicTableBase getTable()

returns table

Overrides:

getTable in class TablePanelBase

Returns:

stateChanged

public void stateChanged(javax.swing.event.ChangeEvent e)

Specified by:

stateChanged in interface javax.swing.event.ChangeListener

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent event)

Specified by:

actionPerformed in interface java.awt.event.ActionListener

Overrides:

actionPerformed in class TablePanelBase

setTableView

public void setTableView(java.lang.String mode)

Parameters:

mode - desired mode for table view

createPopupMenu

protected void createPopupMenu()

create table browser popup menu

updateTableMenus

public void updateTableMenus()

Called by main frame when users change table options using main menu

updatePopupMenuStatus

protected void updatePopupMenuStatus(java.awt.Component[] menu)

Updates selection state of popup menu

updateTitle

protected void updateTitle()

Parameters:

view -

updateTitle

protected void updateTitle(GenomicViewEvents view)

Parameters:

view -

updateTitle

protected void updateTitle(GenomicViewEvents view,
               int track_index)

Parameters:

view -

viewEvent

public void viewEvent()