com.pacbio.secondary.vis.io.gff.summary

Class GFFSummaryConstants

java.lang.Object

com.pacbio.secondary.vis.io.gff.summary.GFFSummaryConstants

public class GFFSummaryConstants
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	GFF_MODS_SUMMARY_VERSION_133
static java.lang.String	GFF_MODS_SUMMARY_VERSION_140
static java.lang.String	GFF_MODS_SUMMARY_VERSION_200
static java.lang.String	GFF_MODS_SUMMARY_VERSION_210
static java.lang.String	GFF_SUMMARY_CONTIG_RECORD_TYPE
static java.lang.String	GFF_SUMMARY_DENOVO_CONTIG_METRICS
static java.lang.String	GFF_SUMMARY_REGION_RECORD_TYPE
static java.lang.String	GFF_SUMMARY_TAG_COVERAGE
static java.lang.String	GFF_SUMMARY_TAG_CQV
static java.lang.String	GFF_SUMMARY_TAG_DEL
static java.lang.String	GFF_SUMMARY_TAG_DENOVO_METRICS
static java.lang.String	GFF_SUMMARY_TAG_FWD_IPD
static java.lang.String	GFF_SUMMARY_TAG_GAPS
static java.lang.String	GFF_SUMMARY_TAG_ID
static java.lang.String	GFF_SUMMARY_TAG_INS
static java.lang.String	GFF_SUMMARY_TAG_REV_IPD
static java.lang.String	GFF_SUMMARY_TAG_SVN
static java.lang.String	GFF_SUMMARY_VERSION_131
static double	SUMMARY_DENOVO_QV_MAX_VALUE
static double	SUMMARY_RESEQUENCING_QV_MAX_VALUE
static double	SUMMARY_RESEQUENCING_QV_MAX_VALUE_V1_2
static double	SUMMARY_RESEQUENCING_QV_MAX_VALUE_V1_3_1

Constructor Summary

Constructors

Constructor and Description
GFFSummaryConstants()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

GFF_SUMMARY_DENOVO_CONTIG_METRICS

public static final java.lang.String GFF_SUMMARY_DENOVO_CONTIG_METRICS

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Constant Field Values

GFF_SUMMARY_VERSION_131

public static final java.lang.String GFF_SUMMARY_VERSION_131

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Constant Field Values

GFF_MODS_SUMMARY_VERSION_133

public static final java.lang.String GFF_MODS_SUMMARY_VERSION_133

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Constant Field Values

GFF_MODS_SUMMARY_VERSION_140

public static final java.lang.String GFF_MODS_SUMMARY_VERSION_140

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Constant Field Values

GFF_MODS_SUMMARY_VERSION_200

public static final java.lang.String GFF_MODS_SUMMARY_VERSION_200

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Constant Field Values

GFF_MODS_SUMMARY_VERSION_210

public static final java.lang.String GFF_MODS_SUMMARY_VERSION_210

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Constant Field Values

GFF_SUMMARY_REGION_RECORD_TYPE

public static final java.lang.String GFF_SUMMARY_REGION_RECORD_TYPE

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Constant Field Values

GFF_SUMMARY_CONTIG_RECORD_TYPE

public static final java.lang.String GFF_SUMMARY_CONTIG_RECORD_TYPE

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Constant Field Values

GFF_SUMMARY_TAG_ID

public static final java.lang.String GFF_SUMMARY_TAG_ID

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Constant Field Values

GFF_SUMMARY_TAG_COVERAGE

public static final java.lang.String GFF_SUMMARY_TAG_COVERAGE

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Constant Field Values

GFF_SUMMARY_TAG_GAPS

public static final java.lang.String GFF_SUMMARY_TAG_GAPS

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Constant Field Values

GFF_SUMMARY_TAG_CQV

public static final java.lang.String GFF_SUMMARY_TAG_CQV

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Constant Field Values

GFF_SUMMARY_TAG_INS

public static final java.lang.String GFF_SUMMARY_TAG_INS

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Constant Field Values

GFF_SUMMARY_TAG_DEL

public static final java.lang.String GFF_SUMMARY_TAG_DEL

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Constant Field Values

GFF_SUMMARY_TAG_SVN

public static final java.lang.String GFF_SUMMARY_TAG_SVN

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Constant Field Values

GFF_SUMMARY_TAG_DENOVO_METRICS

public static final java.lang.String GFF_SUMMARY_TAG_DENOVO_METRICS

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Constant Field Values

GFF_SUMMARY_TAG_FWD_IPD

public static final java.lang.String GFF_SUMMARY_TAG_FWD_IPD

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Constant Field Values

GFF_SUMMARY_TAG_REV_IPD

public static final java.lang.String GFF_SUMMARY_TAG_REV_IPD

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Constant Field Values

SUMMARY_RESEQUENCING_QV_MAX_VALUE_V1_2

public static final double SUMMARY_RESEQUENCING_QV_MAX_VALUE_V1_2

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Constant Field Values

SUMMARY_RESEQUENCING_QV_MAX_VALUE_V1_3_1

public static final double SUMMARY_RESEQUENCING_QV_MAX_VALUE_V1_3_1

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Constant Field Values

SUMMARY_RESEQUENCING_QV_MAX_VALUE

public static double SUMMARY_RESEQUENCING_QV_MAX_VALUE

SUMMARY_DENOVO_QV_MAX_VALUE

public static final double SUMMARY_DENOVO_QV_MAX_VALUE

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Constant Field Values

Constructor Detail

GFFSummaryConstants

public GFFSummaryConstants()