com.pacbio.secondary.vis.io.hdf.data

Class ConsensusCallsTable

java.lang.Object

com.pacbio.secondary.vis.io.hdf.data.UCharMatrixArray

com.pacbio.secondary.vis.io.hdf.data.ConsensusCallsTable

public class ConsensusCallsTable
extends UCharMatrixArray

Stores data for consensus calls. Provides in place translation to standard characters.

Author:

mmilletti

Field Summary

Fields inherited from class com.pacbio.secondary.vis.io.hdf.data.UCharMatrixArray

data

Constructor Summary

Constructors

Constructor and Description
ConsensusCallsTable(java.lang.Object data_in)

Method Summary

Methods

Modifier and Type	Method and Description
byte[]	translateInPlace() Fast and lightweight method to convert compressed consensus sequence in place.

Methods inherited from class com.pacbio.secondary.vis.io.hdf.data.UCharMatrixArray

getAsByte, getAsShort, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ConsensusCallsTable

public ConsensusCallsTable(java.lang.Object data_in)

Parameters:

data_in - byte[] of compressed consensus calls

Method Detail

translateInPlace

public byte[] translateInPlace()

Fast and lightweight method to convert compressed consensus sequence in place.