com.pacbio.secondary.vis.io.hdf.data

Class RawRead

java.lang.Object

com.pacbio.secondary.vis.io.hdf.data.RawRead

public class RawRead
extends java.lang.Object

raw, encoded read as stored inside cmph5

Author:

mmilletti

Field Summary

Fields

Modifier and Type	Field and Description
byte[]	raw_read
short[]	read_ipd
byte[]	read_metrics
float[]	read_qv

Constructor Summary

Constructors

Constructor and Description
RawRead()

Method Summary

Methods

Modifier and Type	Method and Description
byte	getBaseCall(int idx)
int	getBaseIPD(int idx)
short	getBaseMetric(int idx)
float	getBaseQV(int idx)
boolean	hasAnyMetric()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

raw_read

public byte[] raw_read

read_qv

public float[] read_qv

read_metrics

public byte[] read_metrics

read_ipd

public short[] read_ipd

Constructor Detail

RawRead

public RawRead()

Method Detail

getBaseCall

public byte getBaseCall(int idx)

getBaseQV

public float getBaseQV(int idx)

getBaseIPD

public int getBaseIPD(int idx)

getBaseMetric

public short getBaseMetric(int idx)

hasAnyMetric

public boolean hasAnyMetric()