com.pacbio.secondary.vis.io.hdf.data

Class UCharMatrixArray

java.lang.Object

com.pacbio.secondary.vis.io.hdf.data.UCharMatrixArray

Direct Known Subclasses:

ConsensusCallsTable

public class UCharMatrixArray
extends java.lang.Object

Mmemory-space-saving unsigned char array wrapper. Holds an array of C unsigned chars stored as Java bytes and accessed as Java short. Access by absolute index (1D array) or row/column (2D array) Max extent of array is limited by java int size: ~ 2Gb x 2Gb

Author:

mmilletti

Field Summary

Fields

Modifier and Type	Field and Description
protected byte[]	data

Constructor Summary

Constructors

Constructor and Description
UCharMatrixArray(java.lang.Object data_in) set the data into this matrix array

Method Summary

Methods

Modifier and Type	Method and Description
byte	getAsByte(int index)
short	getAsShort(int index) converts byte to unsigned char values using short data type
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

data

protected byte[] data

Constructor Detail

UCharMatrixArray

public UCharMatrixArray(java.lang.Object data_in)

set the data into this matrix array

Parameters:

data_in -

Method Detail

getAsShort

public short getAsShort(int index)

converts byte to unsigned char values using short data type

Parameters:

index -

Returns:

element at position index as short type

getAsByte

public byte getAsByte(int index)

Parameters:

index -

Returns:

element at position index

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object