com.pacbio.secondary.vis.io.hdf.file.bash5

Class BaseH5FileBase

java.lang.Object

com.pacbio.secondary.vis.io.hdf.file.hdf5.HDF5File

com.pacbio.secondary.vis.io.hdf.file.bash5.BaseH5FileBase

public class BaseH5FileBase
extends HDF5File

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	message

Fields inherited from class com.pacbio.secondary.vis.io.hdf.file.hdf5.HDF5File

hdf_file_format, hdf_file_root_group, hdf_file_root_node, MAX_NUM_CACHED_OBJECTS, MAX_NUM_CACHED_OBJECTS_KINETOGRAM

Constructor Summary

Constructors

Constructor and Description
BaseH5FileBase(java.io.File file, int access, int num_cached_objects)

Method Summary

Methods

Modifier and Type	Method and Description
protected static void	appendMsg(java.lang.String s)
static void	main(java.lang.String[] args)
protected static long	readDataset(BaseH5FileBase file, java.lang.String dataset_name)
static void	testAllFiles()
protected static void	testH5BaseFile(java.lang.String file_name)

Methods inherited from class com.pacbio.secondary.vis.io.hdf.file.hdf5.HDF5File

createEmptyDataset, createFilledDataset, createGroup, dispose, getAllAttributes, getAllChildDatasets, getAllChildGroups, getAttributeFloatValues, getAttributeLongValues, getAttributeStringValues, getChildDataset, getChildGroup, getDataset, getDatasetChunkInfo, getDatasetHyperslabInfo, getDataStreamFromDataset, getFileHandle, getFilePath, getGroup, getNamedRootObject, getUCharDataChunk, getUIntDataChunk, readDatasetHyperslab, readUnsignedDatasetHyperslab, testPrintDatasetInfo, toString, writeChunkToDataset, writeStringAttribute, writeUIntAttribute

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

message

public static java.lang.String message

Constructor Detail

BaseH5FileBase

public BaseH5FileBase(java.io.File file,
              int access,
              int num_cached_objects)
               throws HDF5ExceptionEx

Parameters:

file - the path to the file to open or create

access - mode: FileFormat.READ, FileFormat.WRITE, FileFormat.CREATE

Throws:

HDF5ExceptionEx

Method Detail

main

public static void main(java.lang.String[] args)

testAllFiles

public static void testAllFiles()

readDataset

protected static long readDataset(BaseH5FileBase file,
               java.lang.String dataset_name)

testH5BaseFile

protected static void testH5BaseFile(java.lang.String file_name)

appendMsg

protected static void appendMsg(java.lang.String s)