Uses of Class
com.pacbio.secondary.vis.io.hdf.hyperslabinfo.HDF5HyperslabInfo

Packages that use HDF5HyperslabInfo

Package	Description
com.pacbio.secondary.vis.io.hdf.file.cmph5	Support for reading/writing of cmp.h5 files
com.pacbio.secondary.vis.io.hdf.file.hdf5	Support for reading/writing of HDF5 files

Uses of HDF5HyperslabInfo in com.pacbio.secondary.vis.io.hdf.file.cmph5

Methods in com.pacbio.secondary.vis.io.hdf.file.cmph5 with parameters of type HDF5HyperslabInfo

Modifier and Type	Method and Description
UIntMatrixArray	CMPH5FileBase.getAlignmentIndexDataChunk(H5ScalarDS dataset, HDF5HyperslabInfo info) Reads a chunk of data from alignment index dataset.
UCharMatrixArray	CMPH5FileBase.getReadGroupDataChunk(H5ScalarDS dataset, HDF5HyperslabInfo info) Reads a chunk of data from a readgroup dataset.

Uses of HDF5HyperslabInfo in com.pacbio.secondary.vis.io.hdf.file.hdf5

Methods in com.pacbio.secondary.vis.io.hdf.file.hdf5 that return HDF5HyperslabInfo

Modifier and Type	Method and Description
HDF5HyperslabInfo	HDF5File.getDatasetHyperslabInfo(H5ScalarDS dataset) This method returns the default hyperslab selection parameters of the dataset.

Methods in com.pacbio.secondary.vis.io.hdf.file.hdf5 with parameters of type HDF5HyperslabInfo

Modifier and Type	Method and Description
protected UCharMatrixArray	HDF5File.getUCharDataChunk(H5ScalarDS dataset, HDF5HyperslabInfo info) Reads a chunk of UChar data from a dataset.
protected UIntMatrixArray	HDF5File.getUIntDataChunk(H5ScalarDS dataset, HDF5HyperslabInfo info) Reads a chunk of UInt data from a dataset.
protected java.lang.Object	HDF5File.readDatasetHyperslab(H5ScalarDS dataset, HDF5HyperslabInfo info) Reads the data from file to a memory buffer and returns the memory buffer.
protected java.lang.Object	HDF5File.readUnsignedDatasetHyperslab(H5ScalarDS dataset, HDF5HyperslabInfo info) A convenient but not memory-efficient method to read a hyperslab of unsigned integers.
void	HDF5File.writeChunkToDataset(H5ScalarDS dataset, HDF5HyperslabInfo info, java.lang.Object data) Writes a block of data to the selected dataset.