com.pacbio.secondary.vis.io.importer

Class VioletFileAnalyzer

java.lang.Object

com.pacbio.secondary.vis.io.importer.VioletFileAnalyzer

public class VioletFileAnalyzer
extends java.lang.Object

Author:

Marco Milletti

Constructor Summary

Constructors

Constructor and Description
VioletFileAnalyzer()

Method Summary

Methods

Modifier and Type	Method and Description
static void	main(java.lang.String[] args)
protected static void	testAnalyzeFile(java.lang.String path, java.util.ArrayList<java.lang.Integer> list)
protected static void	testFastaIndexAndExtractMetadata(java.lang.String path)
protected static void	testGFFIndexAndExtractMetadata(java.lang.String path, java.util.ArrayList<java.lang.Integer> list)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VioletFileAnalyzer

public VioletFileAnalyzer()

Method Detail

main

public static void main(java.lang.String[] args)

testAnalyzeFile

protected static void testAnalyzeFile(java.lang.String path,
                   java.util.ArrayList<java.lang.Integer> list)

testGFFIndexAndExtractMetadata

protected static void testGFFIndexAndExtractMetadata(java.lang.String path,
                                  java.util.ArrayList<java.lang.Integer> list)

Parameters:

indexer -

path -

num_chunks -

testFastaIndexAndExtractMetadata

protected static void testFastaIndexAndExtractMetadata(java.lang.String path)

Parameters:

indexer -

path -

num_chunks -