Uses of Class
com.pacbio.secondary.vis.io.indexer.gff.metadata.GFFMetadataInfo

Packages that use GFFMetadataInfo

Package	Description
com.pacbio.secondary.vis.io.indexer.gff	GFF indexer

Uses of GFFMetadataInfo in com.pacbio.secondary.vis.io.indexer.gff

Fields in com.pacbio.secondary.vis.io.indexer.gff declared as GFFMetadataInfo

Modifier and Type	Field and Description
GFFMetadataInfo	GFFIndexer.file_info

Methods in com.pacbio.secondary.vis.io.indexer.gff that return GFFMetadataInfo

Modifier and Type	Method and Description
GFFMetadataInfo	GFFIndexer.getGFFFileIndexesAndMetadata(java.lang.String file_name, int num_data_points) Splits a large gff2 file into desired number of chunks, and creates a list of indexes, offset in the file, and corresponding genome position, e.g.: [file_offset] [genome_position] 0x1234 412 0x9876 3258 ....
GFFMetadataInfo	GFFIndexer.getGFFFileRegionIndexesAndMetadata(java.lang.String file_name, int num_chunks, int genomicContig, long fileStartOffset, long fileEndOffset) Splits a gff2 file region into desired number of chunks, and creates a list of indexes (absolute in the file) and corresponding genome position, e.g.: [file_offset] [genome_position] 0x1234 412 0x9876 3258 ....