com.pacbio.secondary.vis.io.indexer.indexinfo

Class GFFIndexInfo

java.lang.Object

com.pacbio.secondary.vis.io.indexer.indexinfo.ASCIIFileIndexInfo

com.pacbio.secondary.vis.io.indexer.indexinfo.GFFIndexInfo

All Implemented Interfaces:

java.io.Serializable

public class GFFIndexInfo
extends ASCIIFileIndexInfo
implements java.io.Serializable

Author:

Marco Milletti

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
int	read_num_annotations
double	read_qv

Fields inherited from class com.pacbio.secondary.vis.io.indexer.indexinfo.ASCIIFileIndexInfo

contig, file_offset, sequence_position

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	GFFIndexInfo() de-serialization only
	GFFIndexInfo(int contig, long position, double read_qv, int read_num_annotations, long file_offset)
	GFFIndexInfo(long position, long file_offset)

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

read_qv

public double read_qv

read_num_annotations

public int read_num_annotations

Constructor Detail

GFFIndexInfo

public GFFIndexInfo(int contig,
            long position,
            double read_qv,
            int read_num_annotations,
            long file_offset)

Parameters:

contig -

position -

read_qv -

read_num_annotations -

file_offset -

GFFIndexInfo

protected GFFIndexInfo()

de-serialization only

GFFIndexInfo

public GFFIndexInfo(long position,
            long file_offset)

Parameters:

position -

file_offset -