com.pacbio.secondary.vis.io.indexer.text

Class TextFileIndexer

java.lang.Object

com.pacbio.secondary.vis.io.indexer.text.TextFileIndexer

Direct Known Subclasses:

FastaIndexer, GFFIndexer

public abstract class TextFileIndexer
extends java.lang.Object

Author:

Marco Milletti

Constructor Summary

Constructors

Constructor and Description
TextFileIndexer()

Method Summary

Methods

Modifier and Type	Method and Description
abstract long	getIndexSliceSize()
protected void	printStatistics(java.io.File file, long genomicStart, long genomicEnd, FileIndexInfo info, long start_time)
protected void	printStatistics(java.lang.String path, long file_size, int num_chunks, long start_time)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TextFileIndexer

public TextFileIndexer()

Method Detail

printStatistics

protected void printStatistics(java.io.File file,
                   long genomicStart,
                   long genomicEnd,
                   FileIndexInfo info,
                   long start_time)

Parameters:

file -

genomicStart -

genomicEnd -

info -

start_time -

printStatistics

protected void printStatistics(java.lang.String path,
                   long file_size,
                   int num_chunks,
                   long start_time)

Parameters:

file -

file_size -

num_chunks -

start_time -

getIndexSliceSize

public abstract long getIndexSliceSize()

Returns:

index slice size