com.pacbio.secondary.vis.io.update

Class UpdateInsertionsDataHelper.UpdateInsertionsThreadHelper

java.lang.Object

javax.swing.SwingWorker<java.lang.Boolean,java.lang.Boolean>

com.pacbio.secondary.vis.io.update.UpdateInsertionsDataHelper.UpdateInsertionsThreadHelper

All Implemented Interfaces:

java.lang.Runnable, java.util.concurrent.Future<java.lang.Boolean>, java.util.concurrent.RunnableFuture<java.lang.Boolean>

Enclosing class:

UpdateInsertionsDataHelper

public class UpdateInsertionsDataHelper.UpdateInsertionsThreadHelper
extends javax.swing.SwingWorker<java.lang.Boolean,java.lang.Boolean>

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.SwingWorker

javax.swing.SwingWorker.StateValue

Constructor Summary

Constructors

Constructor and Description
UpdateInsertionsDataHelper.UpdateInsertionsThreadHelper(VioletApp app, InspectDataDialog dlg, GenomicViewInspect view, long location)

Method Summary

Methods

Modifier and Type	Method and Description
protected java.lang.Boolean	doInBackground()
protected void	doIt()
void	done()
protected DetailsOptions	getDetailsOptions()
protected DetailsStorage	getDetailsStorage()
protected GenomicViewDetails	getDetailsView()
protected void	updateDataSet(TrackDataInfo data_track)
protected void	updateReferenceData() loads fasta reference or consensus data depending on job type e.g.

Methods inherited from class javax.swing.SwingWorker

addPropertyChangeListener, cancel, execute, firePropertyChange, get, get, getProgress, getPropertyChangeSupport, getState, isCancelled, isDone, process, publish, removePropertyChangeListener, run, setProgress

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

UpdateInsertionsDataHelper.UpdateInsertionsThreadHelper

public UpdateInsertionsDataHelper.UpdateInsertionsThreadHelper(VioletApp app,
                                                       InspectDataDialog dlg,
                                                       GenomicViewInspect view,
                                                       long location)

Method Detail

getDetailsView

protected GenomicViewDetails getDetailsView()

getDetailsStorage

protected DetailsStorage getDetailsStorage()

getDetailsOptions

protected DetailsOptions getDetailsOptions()

doInBackground

protected java.lang.Boolean doInBackground()
                                    throws java.lang.Exception

Specified by:

doInBackground in class javax.swing.SwingWorker<java.lang.Boolean,java.lang.Boolean>

Throws:

java.lang.Exception

done

public void done()

Overrides:

done in class javax.swing.SwingWorker<java.lang.Boolean,java.lang.Boolean>

doIt

protected void doIt()

updateReferenceData

protected void updateReferenceData()

loads fasta reference or consensus data depending on job type e.g. resequencing or denovo

updateDataSet

protected void updateDataSet(TrackDataInfo data_track)