com.pacbio.secondary.vis.svc.server

Class JNLPService

java.lang.Object

com.pacbio.secondary.vis.svc.server.JNLPService

public class JNLPService
extends java.lang.Object

This service returns properly formatted jnlp files to use for launching SMRT View

Author:

mmilletti

Constructor Summary

Constructors

Constructor and Description
JNLPService()

Method Summary

Methods

Modifier and Type	Method and Description
java.lang.String	getJNLPFromDataFile(java.lang.String data_file_path, java.lang.String reference_info_path, java.lang.String options, boolean is64bit) Expects a cmp.h5 file path in input, and a path to a reference.info.xml file, not required only for denovo jobs Returns a JNLP file to use to view job
java.lang.String	getJNLPFromJobMetadataFile(java.lang.String metadata_path, java.lang.String reference_info_path, java.lang.String options, boolean is64bit) Expects a metadata.rdf file path in input, a path to a reference.info.xml file, and optional parameters Returns a JNLP file to use to view job
java.lang.String	getJNLPFromJobMetadataFileAndTracks(java.lang.String metadata_path, java.lang.String reference_info_path, java.lang.String tracks_info, java.lang.String user_path, java.lang.String options, boolean is64bit) Expects a cmp.h5 file path in input, and a path to a reference.info.xml file, not required only for denovo jobs Returns a JNLP file to use to view job
java.lang.String	getServiceInfo() returns info about server and this service

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

JNLPService

public JNLPService()

Method Detail

getServiceInfo

public java.lang.String getServiceInfo()

returns info about server and this service

Returns:

getJNLPFromJobMetadataFile

public java.lang.String getJNLPFromJobMetadataFile(java.lang.String metadata_path,
                                          java.lang.String reference_info_path,
                                          java.lang.String options,
                                          boolean is64bit)

Expects a metadata.rdf file path in input, a path to a reference.info.xml file, and optional parameters Returns a JNLP file to use to view job

Parameters:

metadata_path - fully qualified path to metadata.rdf file

reference_info_path - fully qualified path to reference.info.xml

options - optional set of semicolon separated parameters

is64bit - if true, JNLPService returns a jnlp file for 64bit systems, if false the jnlp is for 32bit systems

Returns:

JNLP as string

getJNLPFromDataFile

public java.lang.String getJNLPFromDataFile(java.lang.String data_file_path,
                                   java.lang.String reference_info_path,
                                   java.lang.String options,
                                   boolean is64bit)

Expects a cmp.h5 file path in input, and a path to a reference.info.xml file, not required only for denovo jobs Returns a JNLP file to use to view job

Parameters:

data_file_path - fully qualified path to cmp.h5 file

reference_info_path - optional parameter used to specify a reference file

is64bit - if true, JNLPService returns a jnlp file for 64bit systems, if false the jnlp is for 32bit systems

Returns:

JNLP as string

getJNLPFromJobMetadataFileAndTracks

public java.lang.String getJNLPFromJobMetadataFileAndTracks(java.lang.String metadata_path,
                                                   java.lang.String reference_info_path,
                                                   java.lang.String tracks_info,
                                                   java.lang.String user_path,
                                                   java.lang.String options,
                                                   boolean is64bit)

Expects a cmp.h5 file path in input, and a path to a reference.info.xml file, not required only for denovo jobs Returns a JNLP file to use to view job

Parameters:

data_file_path - fully qualified path to cmp.h5 file

reference_info_path - optional parameter used to specify a reference file

is64bit - if true, JNLPService returns a jnlp file for 64bit systems, if false the jnlp is for 32bit systems

Returns:

JNLP as string