Uses of Class
com.pacbio.secondary.vis.svc.server.data.WsFastaSequenceInfo

Packages that use WsFastaSequenceInfo

Package	Description
com.pacbio.secondary.vis.gui.app	Main application classes, support local, remote, webstart based deployment
com.pacbio.secondary.vis.gui.draw.views	Genomic views
com.pacbio.secondary.vis.io.fasta	FASTA reader support
com.pacbio.secondary.vis.svc.hdf.client	HDFService client support
com.pacbio.secondary.vis.svc.server.hdf	HDFService utils

Uses of WsFastaSequenceInfo in com.pacbio.secondary.vis.gui.app

Methods in com.pacbio.secondary.vis.gui.app with parameters of type WsFastaSequenceInfo

Modifier and Type	Method and Description
boolean	VioletApp.importConsensusSequence(WsFastaSequenceInfo data, GenomicViewDetails view, boolean update)
boolean	VioletApp.importReferenceSequence(WsFastaSequenceInfo data, GenomicViewDetails view, boolean update)

Uses of WsFastaSequenceInfo in com.pacbio.secondary.vis.gui.draw.views

Methods in com.pacbio.secondary.vis.gui.draw.views with parameters of type WsFastaSequenceInfo

Modifier and Type	Method and Description
boolean	GenomicViewDetailsData.setConsensusData(WsFastaSequenceInfo data)
boolean	GenomicViewDetailsData.setReferenceData(WsFastaSequenceInfo data)

Uses of WsFastaSequenceInfo in com.pacbio.secondary.vis.io.fasta

Methods in com.pacbio.secondary.vis.io.fasta that return WsFastaSequenceInfo

Modifier and Type	Method and Description
WsFastaSequenceInfo	FastaFileReader.getSequenceInfo()

Uses of WsFastaSequenceInfo in com.pacbio.secondary.vis.svc.hdf.client

Methods in com.pacbio.secondary.vis.svc.hdf.client that return WsFastaSequenceInfo

Modifier and Type	Method and Description
static WsFastaSequenceInfo	HDFServiceCallbackImpl.getFastaSequenceFromDataHandler(javax.activation.DataHandler data)

Uses of WsFastaSequenceInfo in com.pacbio.secondary.vis.svc.server.hdf

Methods in com.pacbio.secondary.vis.svc.server.hdf that return WsFastaSequenceInfo

Modifier and Type	Method and Description
WsFastaSequenceInfo	GenomicDataServer.getConsensusSequenceFromFile(java.lang.String url, java.lang.String contig_id, int client_contig_index, long start, long stop)