com.pacbio.secondary.vis.svc.server.data.parser

Class ReferenceInfoParser

java.lang.Object

com.pacbio.secondary.vis.svc.server.data.parser.XMLInfoBaseParser

com.pacbio.secondary.vis.svc.server.data.parser.ReferenceInfoParser

public class ReferenceInfoParser
extends XMLInfoBaseParser

Author:

mmilletti

Field Summary

Fields inherited from class com.pacbio.secondary.vis.svc.server.data.parser.XMLInfoBaseParser

job_id, map

Constructor Summary

Constructors

Constructor and Description
ReferenceInfoParser(java.lang.String filename)

Method Summary

Methods

Modifier and Type	Method and Description
protected java.lang.String	getAbsolutePath(java.lang.String relative_file_name, java.lang.String reference_file_name)
protected java.util.ArrayList<WsContigInfo>	getContigData(org.w3c.dom.Document xDoc)
protected void	getContigsData(org.w3c.dom.Document xDoc)
protected void	getGlobalData(java.lang.String reference_file_name)
protected java.lang.Boolean	getGlobalInfo(org.w3c.dom.Document xDoc)
WsReferenceInfo	getReferenceInfo()
protected void	getRefID(org.w3c.dom.Document xDoc)
protected void	parseReferenceFile(java.lang.String reference_file_name)

Methods inherited from class com.pacbio.secondary.vis.svc.server.data.parser.XMLInfoBaseParser

getNodeAttribute, getNodeAttributeData, getNodeAttributeValue, getNodeData, getNodePairedData, getRDF_Info_FromNodeAttribute, getRDF_Path_FromDataID, getRDF_Path_FromResourceIDMarker, getRDF_Title, parseXmlFile

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReferenceInfoParser

public ReferenceInfoParser(java.lang.String filename)

Method Detail

getReferenceInfo

public WsReferenceInfo getReferenceInfo()

parseReferenceFile

protected void parseReferenceFile(java.lang.String reference_file_name)

getGlobalInfo

protected java.lang.Boolean getGlobalInfo(org.w3c.dom.Document xDoc)

getGlobalData

protected void getGlobalData(java.lang.String reference_file_name)

getContigsData

protected void getContigsData(org.w3c.dom.Document xDoc)

getContigData

protected java.util.ArrayList<WsContigInfo> getContigData(org.w3c.dom.Document xDoc)

getRefID

protected void getRefID(org.w3c.dom.Document xDoc)

getAbsolutePath

protected java.lang.String getAbsolutePath(java.lang.String relative_file_name,
                               java.lang.String reference_file_name)