com.pacbio.secondary.vis.svc.server.hdf

Class GenomicDataStructures.WsReadStructure

java.lang.Object

com.pacbio.secondary.vis.svc.server.hdf.GenomicDataStructures.WsReadStructure

All Implemented Interfaces:

java.lang.Comparable<GenomicDataStructures.WsReadStructure>

Enclosing class:

GenomicDataStructures

protected class GenomicDataStructures.WsReadStructure
extends java.lang.Object
implements java.lang.Comparable<GenomicDataStructures.WsReadStructure>

Inner helper class for sorting structured reads

Author:

mmilletti

Constructor Summary

Constructors

Constructor and Description
GenomicDataStructures.WsReadStructure(WsRead read)

Method Summary

Methods

Modifier and Type	Method and Description
void	addSubRead(WsRead read) add more sub-reads
int	compareTo(GenomicDataStructures.WsReadStructure obj)
int	getEnd()
int	getStart()
java.util.ArrayList<WsRead>	getSub_reads()
void	setAllLanes(int lane_index) Set lane for all sub-reads
void	setEnd(int end)
void	setStart(int start)
void	setSub_reads(java.util.ArrayList<WsRead> sub_reads)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GenomicDataStructures.WsReadStructure

public GenomicDataStructures.WsReadStructure(WsRead read)

Parameters:

read -

Method Detail

getSub_reads

public java.util.ArrayList<WsRead> getSub_reads()

setSub_reads

public void setSub_reads(java.util.ArrayList<WsRead> sub_reads)

getStart

public int getStart()

setStart

public void setStart(int start)

getEnd

public int getEnd()

setEnd

public void setEnd(int end)

addSubRead

public void addSubRead(WsRead read)

add more sub-reads

Parameters:

read -

setAllLanes

public void setAllLanes(int lane_index)

Set lane for all sub-reads

Parameters:

lane_index -

compareTo

public int compareTo(GenomicDataStructures.WsReadStructure obj)

Specified by:

compareTo in interface java.lang.Comparable<GenomicDataStructures.WsReadStructure>