com.pacbio.secondary.vis.svc.server.hdf

Class HDFServiceExperienceIndex.ExperienceIndexMetrics

java.lang.Object

com.pacbio.secondary.vis.svc.server.hdf.HDFServiceExperienceIndex.ExperienceIndexMetrics

Enclosing class:

HDFServiceExperienceIndex

protected class HDFServiceExperienceIndex.ExperienceIndexMetrics
extends java.lang.Object

holds metrics used to calc experience index

Author:

mmilletti

Field Summary

Fields

Modifier and Type	Field and Description
protected long	num_bases
protected long	num_reads
protected int	num_repeats
protected double	time_to_read

Constructor Summary

Constructors

Constructor and Description
HDFServiceExperienceIndex.ExperienceIndexMetrics(int num_repeats)

Method Summary

Methods

Modifier and Type	Method and Description
void	addExperienceIndexMetrics(long num_reads, long num_bases, double time_to_read) adds one new metrics data point
long	getAvgNumBases()
long	getAvgNumReads()
long	getAvgThroughput()
double	getAvgTime()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

time_to_read

protected double time_to_read

num_bases

protected long num_bases

num_reads

protected long num_reads

num_repeats

protected int num_repeats

Constructor Detail

HDFServiceExperienceIndex.ExperienceIndexMetrics

public HDFServiceExperienceIndex.ExperienceIndexMetrics(int num_repeats)

Parameters:

num_repeats -

Method Detail

addExperienceIndexMetrics

public void addExperienceIndexMetrics(long num_reads,
                             long num_bases,
                             double time_to_read)

adds one new metrics data point

Parameters:

num_reads -

num_bases -

time_to_read -

getAvgTime

public double getAvgTime()

getAvgNumBases

public long getAvgNumBases()

getAvgNumReads

public long getAvgNumReads()

getAvgThroughput

public long getAvgThroughput()