com.pacbio.secondary.vis.svc.server.hdf

Class HDFServiceExperienceIndex

java.lang.Object

com.pacbio.secondary.vis.svc.server.hdf.HDFServiceExperienceIndex

public class HDFServiceExperienceIndex
extends java.lang.Object

Experience index calculator class. Performs multiple tests to determine performances of smrt view web services Wrapped as web service for automated external tests, also called by built-in server page

Author:

mmilletti

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
protected class	HDFServiceExperienceIndex.ExperienceIndexMetrics holds metrics used to calc experience index

Field Summary

Fields

Modifier and Type	Field and Description
protected static java.lang.String	DEFAULT_TEST_DATAFILE
protected static int	svcexp_mode

Constructor Summary

Constructors

Constructor and Description
HDFServiceExperienceIndex()

Method Summary

Methods

Modifier and Type	Method and Description
protected void	addMetrics(java.lang.StringBuffer buf, java.lang.String file_url, java.lang.String data_description, java.lang.String contig_id, int client_contig_index, long start, long end, int num_repeats)
protected void	analyzeSingleContigDataFile(java.lang.String single_contig_file_url, java.lang.String contig_id, int client_contig_index, long start, long end, HDFServiceExperienceIndex.ExperienceIndexMetrics metrics)
protected void	AppendRowToTable(java.lang.String h, java.lang.String v, java.lang.StringBuffer buf)
java.lang.String	getHDFServiceExperienceIndex(java.lang.String[] files) Tests read performances on one or more files Averages results from three tests for each file Reports results in user-friendly bases/sec metric

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

svcexp_mode

protected static final int svcexp_mode

DEFAULT_TEST_DATAFILE

protected static final java.lang.String DEFAULT_TEST_DATAFILE

See Also:

Constant Field Values

Constructor Detail

HDFServiceExperienceIndex

public HDFServiceExperienceIndex()

Method Detail

getHDFServiceExperienceIndex

public java.lang.String getHDFServiceExperienceIndex(java.lang.String[] files)

Tests read performances on one or more files Averages results from three tests for each file Reports results in user-friendly bases/sec metric

Parameters:

files - list of files to analyze

Returns:

returns an html string containing performance results

addMetrics

protected void addMetrics(java.lang.StringBuffer buf,
              java.lang.String file_url,
              java.lang.String data_description,
              java.lang.String contig_id,
              int client_contig_index,
              long start,
              long end,
              int num_repeats)

Parameters:

buf -

file_url -

data_description -

contig_id -

client_contig_index -

start -

end -

num_repeats -

AppendRowToTable

protected void AppendRowToTable(java.lang.String h,
                    java.lang.String v,
                    java.lang.StringBuffer buf)

Parameters:

h - description

v - value

buf -

analyzeSingleContigDataFile

protected void analyzeSingleContigDataFile(java.lang.String single_contig_file_url,
                               java.lang.String contig_id,
                               int client_contig_index,
                               long start,
                               long end,
                               HDFServiceExperienceIndex.ExperienceIndexMetrics metrics)

Parameters:

single_contig_file_url -

contig_id -

client_contig_index -

start -

end -

metrics -