Uses of Class
com.pacbio.secondary.vis.svc.server.hdf.GenomicDataStructures.WsReadStructure

Packages that use GenomicDataStructures.WsReadStructure

Package	Description
com.pacbio.secondary.vis.svc.server.hdf	HDFService utils

Uses of GenomicDataStructures.WsReadStructure in com.pacbio.secondary.vis.svc.server.hdf

Methods in com.pacbio.secondary.vis.svc.server.hdf with parameters of type GenomicDataStructures.WsReadStructure

Modifier and Type	Method and Description
int	GenomicDataStructures.WsReadStructure.compareTo(GenomicDataStructures.WsReadStructure obj)
protected GraphStructure	GenomicDataAssembler.createGraphLinesStructure(GenomicDataStructures.WsReadStructure[] structures, int total_structures) Strobe reads as graphic lines
protected GraphStructure	GenomicDataAssembler.createGraphLinksStructure(GenomicDataStructures.WsReadStructure[] structures, int total_structures) CCS reads as graphic links
protected GraphStructure	GenomicDataAssembler.createGraphNodesStructure(GenomicDataStructures.WsReadStructure[] structures, int total_structures) Strobe reads as graphic nodes
protected GraphStructure	GenomicDataAssembler.createGraphStructure(WsResults results, GenomicDataStructures.WsReadStructure[] structures, int total_structures, int mode) Creates annotated graph structure from data
protected void	GenomicDataAssembler.PileUpResultsWithStructures(GenomicDataStructures.WsReadStructure[] structures, WsResults results, int total_reads, int mode) Pileup of results with graphics structures Supports CCS and strobe reads